View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_low_1 (Length: 630)
Name: NF14084_low_1
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 49446495 - 49446950
Alignment:
| Q |
17 |
catagatgtatccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgacagatgagagtctccggtaaattgc |
116 |
Q |
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| T |
49446495 |
catagatgtatccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgacagatgagagtctccggtaaattgc |
49446594 |
T |
|
| Q |
117 |
tgatcctatcatcgtcgtctttatccggaattgatgacatttctgatgtaagaaaacttgaattttctgcagaatgcaaacaaccaaaatgttatgtttc |
216 |
Q |
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| T |
49446595 |
tgatcctatcatcgtcgtcgttatccgcaattgatgacatttctgatgtaagaaaacttgaattttctgcagaatgcaaacaaccaaaatgttatgtttc |
49446694 |
T |
|
| Q |
217 |
agcacataacaactaatacagaaaatttgtgatggcagattttgaacagaagtaaaagcagattagatatttatcattccaaaaaatgaatagtaaatct |
316 |
Q |
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| T |
49446695 |
agcacataacaactaatacagaaaatttgtgatggaagattttgcacagaagtaaaagcagattagatatttatcattccaaaaaatgaatagtaaatct |
49446794 |
T |
|
| Q |
317 |
aataactaacaggtaacatttgtcactnnnnnnnnnnnttaatctaactggtttgagctaagttagaggtctttgatccaaactcatac-aaaagagaaa |
415 |
Q |
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| T |
49446795 |
aacaactaactggtaacatttgtcactaaaaaaaaaaaataatctaactggattgagctaagttagaggtctttgatccaaactcatacaaaaagagaaa |
49446894 |
T |
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| Q |
416 |
atattaatcttaaccactaacattttccattaataataattaaacatgaatgttgt |
471 |
Q |
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| T |
49446895 |
atattaatcttaaccactaacattttccattaataataattaaacatgaatgttgt |
49446950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 478 - 628
Target Start/End: Original strand, 49446977 - 49447132
Alignment:
| Q |
478 |
cacagaatgaagtgattaagaagaacaagttatataacttactgagtgggttggttaaggatgctgtatttttgctacttcaactccaatctcgtcatct |
577 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49446977 |
cacagaatgaagtgattaagaagaacaagttatataacttactgagtgggttggttaaggatgctgtatttttgctacttcaactccaatctcttcatct |
49447076 |
T |
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| Q |
578 |
ttcagaaaaccc-----tattactcttcttcgcatccatttactgtactacctacc |
628 |
Q |
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| T |
49447077 |
ttcagaaaaccctattatattactcttcttcgcatccatttactgtactacctacc |
49447132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 49427606 - 49427677
Alignment:
| Q |
27 |
tccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgacagatga |
98 |
Q |
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| T |
49427606 |
tccatctcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatga |
49427677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 49439031 - 49439080
Alignment:
| Q |
41 |
aggacactagtggcaacagcttgtttggtagggagaaaagagagaatatg |
90 |
Q |
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| T |
49439031 |
aggacgctagtggcaacaacctgtttggttgggagaaaagagagaatatg |
49439080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 12539910 - 12539864
Alignment:
| Q |
50 |
gtggcaacagcttgtttggtagggagaaaagagagaatatgacagat |
96 |
Q |
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| T |
12539910 |
gtggcagcagattgtttggtagggagaaaagagagaatgtggcagat |
12539864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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