View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_low_13 (Length: 348)
Name: NF14084_low_13
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 7140403 - 7140721
Alignment:
| Q |
12 |
aagaatattacctctcattggtaacttacatcaactagcatttgcaggaaaacttccacatcatggtctccaaaaactttctcaaaaatatggaccttta |
111 |
Q |
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| T |
7140403 |
aagaaaattacctctcattggtaacttacatcaactagcatttgcaggaaaacttccacatcatgggcttcaaaaactttctcaaaaatatggaccatta |
7140502 |
T |
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| Q |
112 |
atgcacctaaaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggc |
211 |
Q |
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| T |
7140503 |
atgcacctacaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggc |
7140602 |
T |
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| Q |
212 |
caaaacttccttctcttaaaattttagcctatggttttaaagatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgtgtctt |
311 |
Q |
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| T |
7140603 |
caaaacttccttctcttaaaattttagcctatggttttaaagatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgtgtctt |
7140702 |
T |
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| Q |
312 |
agagattctaagtgctaaa |
330 |
Q |
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| T |
7140703 |
agagattctaagtgctaaa |
7140721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 60 - 330
Target Start/End: Original strand, 7152282 - 7152552
Alignment:
| Q |
60 |
aaaacttccacatcatggtctccaaaaactttctcaaaaatatggacctttaatgcacctaaaactaggtgaaattaatgcagtggttgtttcttcctca |
159 |
Q |
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| T |
7152282 |
aaaacgtccacatcatgctctacatgaactttctcataaatatggacctttaatgcacatacaacttggtgaaatttctactgtgattgtatcatctcct |
7152381 |
T |
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| Q |
160 |
aatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggccaaaacttccttctcttaaaattttagcctatggttttaaagatattg |
259 |
Q |
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| T |
7152382 |
aaattggcaaaggaaataatgaaaacacatgatgctgcttttgctaataggccaaaacttctttcccctgaaattatggcctatggttcaaaagatattg |
7152481 |
T |
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| Q |
260 |
tattttctccatatggtgattattggagacaaatgagaaaaatatgtgtcttagagattctaagtgctaaa |
330 |
Q |
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| T |
7152482 |
tattttctccatatggtgatttttggagacaaatgagaaaaatatgtgtctttgaacttctaagtgctaaa |
7152552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 324
Target Start/End: Original strand, 7130114 - 7130352
Alignment:
| Q |
86 |
aactttctcaaaaatatggacctttaatgcacctaaaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaac |
185 |
Q |
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| T |
7130114 |
aacttgctcataaatatggacctattgtccacctaaaacttggtgaaacttctgctgtagttatatcctcgccaaagttagcaaaagaaatattgaaaac |
7130213 |
T |
|
| Q |
186 |
acatgatgttgtttttgctaataggccaaaacttccttctcttaaaattttagcctatggttttaaagatattgtattttctccatatggtgattattgg |
285 |
Q |
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| T |
7130214 |
ccatgatgttatttttgctaataggccacaccttcaagcttctcatattatgacttatggttcaaaagatattgcattttctccatatggtgattattgg |
7130313 |
T |
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| Q |
286 |
agacaaatgagaaaaatatgtgtcttagagattctaagt |
324 |
Q |
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||||||||||||||||||||| | |||||| || ||||| |
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| T |
7130314 |
agacaaatgagaaaaatatgtatgttagagcttttaagt |
7130352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 31185565 - 31185532
Alignment:
| Q |
95 |
aaaaatatggacctttaatgcacctaaaactagg |
128 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
31185565 |
aaaaatatggacccttaatgcacctaaaactagg |
31185532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 306
Target Start/End: Complemental strand, 55959917 - 55959704
Alignment:
| Q |
93 |
tcaaaaatatggacctttaatgcacctaaaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgat |
192 |
Q |
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|||||||||||||||| | ||||| || | |||||||||||| | || | ||||| || ||| | |||||||||| || || |||| |||| |||| |
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| T |
55959917 |
tcaaaaatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgat |
55959818 |
T |
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| Q |
193 |
gttgtttttgctaataggccaaaacttccttctcttaaaattttagcctatggttttaaagatattgtattttctccatatggtgattattggagacaaa |
292 |
Q |
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| T |
55959817 |
cttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtattgtctttgctccatacggtgattattggagacaaa |
55959718 |
T |
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| Q |
293 |
tgagaaaaatatgt |
306 |
Q |
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|||| ||||||||| |
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| T |
55959717 |
tgaggaaaatatgt |
55959704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 306
Target Start/End: Complemental strand, 55956527 - 55956255
Alignment:
| Q |
34 |
aacttacatcaactagcatttgcaggaaaacttccacatcatggtctccaaaaactttctcaaaaatatggacctttaatgcacctaaaactaggtgaaa |
133 |
Q |
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||||| |||||||||||||| | |||| ||||||||||||| ||| | | | || || | |||||||||||| | ||| | || | || ||||||| |
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| T |
55956527 |
aacttgcatcaactagcattaggaggatcacttccacatcatactcttcgagatctatccaacaaatatggacctcttatgtatcttcagcttggtgaaa |
55956428 |
T |
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| Q |
134 |
ttaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggccaaaacttccttctcttaaaat |
233 |
Q |
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| T |
55956427 |
tttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaat |
55956328 |
T |
|
| Q |
234 |
tttagcctatggttttaaagatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgt |
306 |
Q |
| |
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||| | |||| || | ||||||||| | | ||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
55956327 |
attatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgt |
55956255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 8952526 - 8952578
Alignment:
| Q |
256 |
attgtattttctccatatggtgattattggagacaaatgagaaaaatatgtgt |
308 |
Q |
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| T |
8952526 |
attgtttttgctccatatggtgatttttggagagaaataagaaaaatttgtgt |
8952578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 12426641 - 12426585
Alignment:
| Q |
250 |
aaagatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgt |
306 |
Q |
| |
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| T |
12426641 |
aaagatattatctttgcttcatatggtgattattggagacagatgagaaaaatatgt |
12426585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 12266198 - 12266235
Alignment:
| Q |
269 |
catatggtgattattggagacaaatgagaaaaatatgt |
306 |
Q |
| |
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| T |
12266198 |
catatggtgattattggagacagatgagaaaaatatgt |
12266235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 12426857 - 12426820
Alignment:
| Q |
34 |
aacttacatcaactagcatttgcaggaaaacttccaca |
71 |
Q |
| |
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| T |
12426857 |
aacttgcatcaactagcattagcaggaaaacttccaca |
12426820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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