View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_low_14 (Length: 345)
Name: NF14084_low_14
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 1839385 - 1839688
Alignment:
| Q |
14 |
atattggaaattctcgctgctaaaatgatgaacaatgttattggtgtacgttgatctaacaaaagagactggttatgttttggtccggctgagtggaaag |
113 |
Q |
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| T |
1839385 |
atattggaaattctcgctgctaaaatgatgaacaatgttattggtgtacgttggtctaacaaaagagactggttatgttttggtccggctgagtggaa-- |
1839482 |
T |
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| Q |
114 |
aatgtcggctcgggattcaactcttaccaattgcttcatgtttcagaagttttatggtctctaattttaagtatttgaagggactagtagatgttacgta |
213 |
Q |
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| T |
1839483 |
---------tcggcattcaactcttaccaattgcttcatgtttcagaagttttatggtctctaattttaagtattttaagggactagtagatgttacgta |
1839573 |
T |
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| Q |
214 |
ctttcactaagtgagtgtttttcacaaagacaatgagaacaatgaatcataactttggtaacatgccttaatatacttggaccattgaaatccattcact |
313 |
Q |
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| T |
1839574 |
ctttcactaagtgagtgtttttcacaaagacaatgagaacaatgaatcataactttggtaacatgccttaatatacttggaccattgaaatccattcact |
1839673 |
T |
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| Q |
314 |
aaatattgtcttatg |
328 |
Q |
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| T |
1839674 |
aaatattgtcttatg |
1839688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 1842381 - 1842457
Alignment:
| Q |
68 |
tctaacaaaagagac-tggt-tatgttttggtccggctgagtggaaagaatgtcggctcgggattcaactcttacca |
142 |
Q |
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| T |
1842381 |
tctaacaaaagagacatggtctatggtttggtcctgctgagtggaaagaatgttggctcggcattcagctcttacca |
1842457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 1832378 - 1832433
Alignment:
| Q |
87 |
tatgttttggtccggctgagtggaaagaatgtcggctcgggattcaactcttacca |
142 |
Q |
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| T |
1832378 |
tatggtttggtcctgctgagtggaaagaatgtcggctcggcattcagctcttacca |
1832433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 1847024 - 1847079
Alignment:
| Q |
87 |
tatgttttggtccggctgagtggaaagaatgtcggctcgggattcaactcttacca |
142 |
Q |
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| T |
1847024 |
tatggtttggtccggctcagtggaaagaatgtcggctcggaattcagctcttacca |
1847079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 1836121 - 1836205
Alignment:
| Q |
42 |
tgaacaatgttattggtgtacgttgatctaacaaaagagac--tggt-tatgttttggtccggctgagtggaaagaatgtcggct |
123 |
Q |
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| T |
1836121 |
tgaacaaggttattagtatactttggtctaacaaaagagacagtggtctatggtttggtccagctgagtggaaagaatgtcggct |
1836205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 6525938 - 6525846
Alignment:
| Q |
53 |
attggtgtacgttgatctaacaaaagagac--tggtt-atgttttggtccggctgagtggaaagaatgtcggctcgggattcaactcttacca |
142 |
Q |
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| T |
6525938 |
attggtgtactttggtcgaacaaaagagacagtggtttatggtttggtccagctgaatggaaagaatgtaggcttgggattcagctcttacca |
6525846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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