View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_low_2 (Length: 616)
Name: NF14084_low_2
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 166 - 445
Target Start/End: Original strand, 17407130 - 17407410
Alignment:
| Q |
166 |
tgttgtgttggtttttaacacgaatacatatgacatcagacacgcttttaatatgaagtgttttacagtgctactatatttttaaacaattctattgatt |
265 |
Q |
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| T |
17407130 |
tgttatgtcggtttttgacacgaatacatatgacatcagacacgctttcaatataaaatgtttgatagtgctactatatttttaaacaattgtattgatt |
17407229 |
T |
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| Q |
266 |
cttggtgatgttatttatttcattcataaagatatctctaatcctaa-tcataagtcataacccatgtgttattattttccaatgacatcacatgctact |
364 |
Q |
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| T |
17407230 |
cttggtgatgttatttatttcattcataaagatatctctaatcataagtcataagtcataacccatgtgttattattttccaatgacatcacatgctact |
17407329 |
T |
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| Q |
365 |
ctgaaatcactgccacatcataaattcataccaccccttcactctatttatacccccacacatcttctttccctctccaca |
445 |
Q |
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| T |
17407330 |
ctgaaaccactgccacatcataaattcataccaccccttcactctatttatacccccacacatcttctttccctctccaca |
17407410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 17406976 - 17407082
Alignment:
| Q |
10 |
aatatttgtcgaaagaggtcaatacaacnnnnnnntgaatacgagaatacttatatctcgtggagggcacttatatagtacatgtactaaaatcatcatt |
109 |
Q |
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| T |
17406976 |
aatatttgtcgaaagagatcaatacaacaaaaaaatgaatacgagaatacttatatctcgtggagggcacttatatagtacatgtactaatatcatcatt |
17407075 |
T |
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| Q |
110 |
ttaacat |
116 |
Q |
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| T |
17407076 |
ttaacat |
17407082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 542 - 600
Target Start/End: Original strand, 17407507 - 17407565
Alignment:
| Q |
542 |
atcataacacaaacaaaaatgcataacattagtctaaacatgccaccaatgtctcaaac |
600 |
Q |
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| T |
17407507 |
atcataacacaaacaaaaatgcataacattagtctaaacatgccaccaatgtctcaaac |
17407565 |
T |
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