View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14084_low_23 (Length: 228)

Name: NF14084_low_23
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14084_low_23
NF14084_low_23
[»] chr6 (2 HSPs)
chr6 (22-135)||(17360861-17360974)
chr6 (19-47)||(16466156-16466184)
[»] chr3 (6 HSPs)
chr3 (22-52)||(37056876-37056906)
chr3 (16-45)||(24979089-24979118)
chr3 (22-51)||(31170378-31170407)
chr3 (22-51)||(47498164-47498193)
chr3 (15-47)||(20393986-20394018)
chr3 (22-50)||(46336725-46336753)
[»] scaffold0074 (1 HSPs)
scaffold0074 (22-50)||(17720-17748)
[»] chr7 (1 HSPs)
chr7 (18-46)||(36669524-36669552)
[»] chr5 (1 HSPs)
chr5 (15-47)||(1122637-1122669)
[»] chr4 (1 HSPs)
chr4 (19-47)||(7257903-7257931)
[»] chr2 (1 HSPs)
chr2 (22-50)||(518458-518486)
[»] chr1 (1 HSPs)
chr1 (19-47)||(48356010-48356038)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 17360861 - 17360974
Alignment:
Q  22 tacaatttgggacggagggagtattttatttgatgacaaaaatgtttttatttaagtaatacgacattgatattattatactaatttaacaacgggtgcg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17360861 tacaatttgggacggagggagtattttatttgatgacaaaaatgtttttatttaagtaatacgacattgatatgattatactaatttaacaacgggtgcg 17360960  T
Q  122 gaaacgaaggagag 135  Q
    ||||||||||||||    
T  17360961 gaaacgaaggagag 17360974  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 16466184 - 16466156
Alignment:
Q  19 tcgtacaatttgggacggagggagtattt 47  Q
    |||||||||||||||||||||||||||||    
T  16466184 tcgtacaatttgggacggagggagtattt 16466156  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 37056876 - 37056906
Alignment:
Q  22 tacaatttgggacggagggagtattttattt 52  Q
    |||||||||||||||||||||||||||||||    
T  37056876 tacaatttgggacggagggagtattttattt 37056906  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 24979089 - 24979118
Alignment:
Q  16 atatcgtacaatttgggacggagggagtat 45  Q
    ||||||||||||||||||||||||||||||    
T  24979089 atatcgtacaatttgggacggagggagtat 24979118  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 31170407 - 31170378
Alignment:
Q  22 tacaatttgggacggagggagtattttatt 51  Q
    ||||||||||||||||||||||||||||||    
T  31170407 tacaatttgggacggagggagtattttatt 31170378  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 47498164 - 47498193
Alignment:
Q  22 tacaatttgggacggagggagtattttatt 51  Q
    ||||||||||||||||||||||||||||||    
T  47498164 tacaatttgggacggagggagtattttatt 47498193  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 20394018 - 20393986
Alignment:
Q  15 aatatcgtacaatttgggacggagggagtattt 47  Q
    |||||| ||||||||||||||||||||||||||    
T  20394018 aatatcatacaatttgggacggagggagtattt 20393986  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 46336753 - 46336725
Alignment:
Q  22 tacaatttgggacggagggagtattttat 50  Q
    |||||||||||||||||||||||||||||    
T  46336753 tacaatttgggacggagggagtattttat 46336725  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 17720 - 17748
Alignment:
Q  22 tacaatttgggacggagggagtattttat 50  Q
    |||||||||||||||||||||||||||||    
T  17720 tacaatttgggacggagggagtattttat 17748  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 36669552 - 36669524
Alignment:
Q  18 atcgtacaatttgggacggagggagtatt 46  Q
    |||||||||||||||||||||||||||||    
T  36669552 atcgtacaatttgggacggagggagtatt 36669524  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 1122637 - 1122669
Alignment:
Q  15 aatatcgtacaatttgggacggagggagtattt 47  Q
    ||||||||||||||||| |||||||||||||||    
T  1122637 aatatcgtacaatttggaacggagggagtattt 1122669  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 7257931 - 7257903
Alignment:
Q  19 tcgtacaatttgggacggagggagtattt 47  Q
    |||||||||||||||||||||||||||||    
T  7257931 tcgtacaatttgggacggagggagtattt 7257903  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 518486 - 518458
Alignment:
Q  22 tacaatttgggacggagggagtattttat 50  Q
    |||||||||||||||||||||||||||||    
T  518486 tacaatttgggacggagggagtattttat 518458  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 48356010 - 48356038
Alignment:
Q  19 tcgtacaatttgggacggagggagtattt 47  Q
    |||||||||||||||||||||||||||||    
T  48356010 tcgtacaatttgggacggagggagtattt 48356038  T

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