View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14084_low_4 (Length: 548)
Name: NF14084_low_4
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 30629733 - 30629211
Alignment:
| Q |
8 |
ggtagattattctcttccaactagattttcttcaaatacaagagtcacaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaa |
107 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629733 |
ggtaaattcttctcttccaattagattttcttcaaatacaagagtcgtaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaa |
30629634 |
T |
|
| Q |
108 |
gtctcaaaccaatcacaaattggtccctaatctacattataaccatagcataaaattaaaatgtttaatttacaacacaaaatcggaagaaagcataaac |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30629633 |
atctcaaaccaatcacaagttggtccctaatctacattataaccatatcataaaattaaaatgtttaatatacaacacaaaatcggaagaaagcataaac |
30629534 |
T |
|
| Q |
208 |
tcataagcaccttcaaactagaagttgaatacaaagatacacttattccaaatagagttctaagataggaaaaatcacttcacatgtaacacaattctct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629533 |
tcataagcaccttcaaactagaagttgaatacaaagatacacttattccaaatagagttctaagataggaaaaatcacttcacatgtaacacaattctct |
30629434 |
T |
|
| Q |
308 |
ctttcactgccttgctatctatataaaatatattcgcatatgatcacttagataatgacataatctctacaacatcatggccacataaccgcaatatttg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629433 |
ctttcactgccttgctatctatataaaatatattcgcatatgatcacttagataatgacataatctctacaacatcatggccacataaccgcaatatttg |
30629334 |
T |
|
| Q |
408 |
tcgtaccatcatttatataaagcattcacttttctgagtgaccattgttttgctcaattacaatcaaggttgtagcctttaataatcacgaggtatcttt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629333 |
tcgtaccatcatttatataaagcattcacttttctgagtgaccattgttttgctcaattacaatcaaggttgtagcctttaataatcacgaggtatcttt |
30629234 |
T |
|
| Q |
508 |
gactatccaaaagtatatatact |
530 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
30629233 |
gactacccaaaagtatatatact |
30629211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 34329631 - 34329597
Alignment:
| Q |
51 |
gtcacaaatcaaacttctgaccacttgtttaaagt |
85 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
34329631 |
gtcacaaatcaaacatctgaccacttgtttaaagt |
34329597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University