View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14084_low_5 (Length: 519)
Name: NF14084_low_5
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_low_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 5 - 502
Target Start/End: Original strand, 15648760 - 15649256
Alignment:
| Q |
5 |
tgtcgaagaaaatatatgttttgcaaatttttaatcaataaaatatttcaactaagaaaacataaatcagtttttgnnnnnnnnttgaatgtatgaaaca |
104 |
Q |
| |
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|||| |||||||||||| |||| ||| ||||||||| |||||||||||||||||| |||||| ||| || |||| |||||||||||||||| |
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| T |
15648760 |
tgtcaaagaaaatatatattttacaa-tttttaatcgataaaatatttcaactaaaaaaacacaaacaagattttcaacaaaaattgaatgtatgaaaca |
15648858 |
T |
|
| Q |
105 |
cttaacttgtcaagatgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatagcacaagataaaatatttttgg |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15648859 |
cttaacttgtcaagctgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatggcacaagataaaatatttttgg |
15648958 |
T |
|
| Q |
205 |
cttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttattaannnnnnnggaatttttgg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
15648959 |
cttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttaataatttttttggaatttttgg |
15649058 |
T |
|
| Q |
305 |
tccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatcgaagtatggt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15649059 |
tccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatcgaagtatggt |
15649158 |
T |
|
| Q |
405 |
ggctttgaaatggatcttccttcaacgaacgttgtgtccatannnnnnnaattgtgctacttgcaaatgatggtattgtttcctcgtaagtctaagtt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15649159 |
ggctttgaaatggatcttccttcaacgaacgttgtgtccatatttttttaattgtgctacttgcaaatgatggtattgtttcctcgtaagtctaagtt |
15649256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 100 - 446
Target Start/End: Original strand, 15658099 - 15658448
Alignment:
| Q |
100 |
aaacacttaacttgtcaagatgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatagcacaagataaaatatt |
199 |
Q |
| |
|
|||||| |||| ||||||| | ||||||||||| ||| | ||||||||||||||||||||| | || ||||||| ||||||| |||||| |||||||||| |
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|
| T |
15658099 |
aaacacctaacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatt |
15658198 |
T |
|
| Q |
200 |
tttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgac---catttattaannnnnnngga |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
15658199 |
tttggcttttgcttcttgttccatgttcttgatatcttcatcattgaattcatcttcagatttcaacacttctcgacgaccatttattaattttttcgga |
15658298 |
T |
|
| Q |
297 |
atttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatcga |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15658299 |
atttttggtccattcttaatcacaagccaaattttatagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatcga |
15658398 |
T |
|
| Q |
397 |
agtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
15658399 |
agtatggtggctttgaaatggatcttccttcaatgatggttgtgtccata |
15658448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 94 - 446
Target Start/End: Original strand, 15628291 - 15628649
Alignment:
| Q |
94 |
tgtatgaaacacttaacttgtcaagatgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatagcacaagataa |
193 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||| |||||| |||| |
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|
| T |
15628291 |
tgtatgaaacacttaacctgtcaagctcctcccacatttccttggctgtctgacaacttgaaattcttttaagatcatctggatttaaggcacaacataa |
15628390 |
T |
|
| Q |
194 |
aatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttattaannnnnnn |
293 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| | || ||||| ||| | |
|
|
| T |
15628391 |
aatatttttggcttttgcttctagttccacgttcttcttatcttcaccattgaattcatcttcagatttctctgatgctataccatctatcattattttg |
15628490 |
T |
|
| Q |
294 |
ggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagt------ttg |
387 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | | ||||||| |||||||||||||||||| ||||||| |||||||||||||| | ||| |
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|
| T |
15628491 |
ggaatatttggtccattcttaatcacaagccagagatcgaagtcaacggattgtatgaatatctttatacgctccttccattcagtacaatttgttgttg |
15628590 |
T |
|
| Q |
388 |
taccatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
15628591 |
taccatcgaagtatggtggctttgaaatggatctcccttccacgatcgttgtgtccata |
15628649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 89 - 446
Target Start/End: Original strand, 15611204 - 15611564
Alignment:
| Q |
89 |
ttgaatgtatgaaacacttaacttgtcaagatgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatagcacaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||||| ||| || || || |||||||||||||| | | ||||||| | |||| |||||| |
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|
| T |
15611204 |
ttgaatgtatgaaacacttaacttgtcgagctcctcccacatttcctttgccgtatggcaacttgaaattcttcttagatcatctgggtttaaggcacaa |
15611303 |
T |
|
| Q |
189 |
gataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttattaann |
288 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||| || ||| ||||| ||||| |
|
|
| T |
15611304 |
tataaaatatttttggcttttgcttctcgttccatgatcttcttatcttcatcattgaattcatcttcagatttctccaactcttcaccatgtattattt |
15611403 |
T |
|
| Q |
289 |
nnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagt---t |
385 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||||| ||||||| ||||| |||||||| | | |
|
|
| T |
15611404 |
tttttggaattttcggtccattcttaatcacaagccaaagatcgaagtcaacggattgtatgaatatctttatacgctccttccactcagtacaatttgt |
15611503 |
T |
|
| Q |
386 |
tgtaccatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||| |
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|
| T |
15611504 |
tgtaccatcgaagtatggtggctttgaaatggatctcccttccacgatcattgtgtccata |
15611564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 90 - 430
Target Start/End: Original strand, 15536849 - 15537189
Alignment:
| Q |
90 |
tgaatgtatgaaacacttaacttgtcaagatgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatagcacaag |
189 |
Q |
| |
|
|||||||| ||| |||||||| |||| || | ||||||||||| ||| || || || |||||||||||||| || ||||| | |||| |||||| |
|
|
| T |
15536849 |
tgaatgtacgaagcacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattcttccaagatcattcgggtttaaggcacaat |
15536948 |
T |
|
| Q |
190 |
ataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttattaannn |
289 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||| |
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|
| T |
15536949 |
ataaaatagttttggcttttgcttctagttccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaattt |
15537048 |
T |
|
| Q |
290 |
nnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgta |
389 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| | ||| ||| |||||||||||| |||| || | || |||| ||||| | |||||| |
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|
| T |
15537049 |
ttttggaagttttggtccattctcaatcacaagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgta |
15537148 |
T |
|
| Q |
390 |
ccatcgaagtatggtggctttgaaatggatcttccttcaac |
430 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15537149 |
ccatcgaagtatggtggctttgaaacggatcttccttcaac |
15537189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 95 - 430
Target Start/End: Original strand, 15523774 - 15524108
Alignment:
| Q |
95 |
gtatgaaacacttaacttgtcaagatgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatagcacaagataaa |
194 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||| | || ||| || |||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||| |
|
|
| T |
15523774 |
gtatgaaa-acttaacttgtcaagcttctcccatacttcctttgccgtctgacaacttaaaattctcttaagatcatctggatttatggcacaacataaa |
15523872 |
T |
|
| Q |
195 |
atatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttattaannnnnnng |
294 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| |||| ||||||| ||||||||||||||| | |||| ||||||| ||||||||||| | |
|
|
| T |
15523873 |
atatttttagcttttacttctggttccatgatcttcctatcttcatcattgaattcatctatcgtcttcagcacttcttcaccatttattattttttttg |
15523972 |
T |
|
| Q |
295 |
gaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatc |
394 |
Q |
| |
|
||| |||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||| || | || |||| ||||| | ||||||||||| |
|
|
| T |
15523973 |
gaagttttggtccattctcaatcacaagccatacttcaaagtcaacagattgtatgaatatcttcataagttccctccactcagttaaatttgtaccatc |
15524072 |
T |
|
| Q |
395 |
gaagtatggtggctttgaaatggatcttccttcaac |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
15524073 |
aaagtatggtggctttgaaatggatcttccttcaac |
15524108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 98 - 446
Target Start/End: Original strand, 15504216 - 15504564
Alignment:
| Q |
98 |
tgaaacacttaacttgtcaagatgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatagcacaagataaaata |
197 |
Q |
| |
|
||||| ||||||| || |||| | ||||||||||| ||| || ||||| || ||||||||| ||| || || |||| ||||| ||||||| ||||||| |
|
|
| T |
15504216 |
tgaaaaacttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcacaacgtaaaata |
15504315 |
T |
|
| Q |
198 |
tttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttattaannnnnnnggaa |
297 |
Q |
| |
|
| |||||||||||||||||||||||| | || ||||||| |||||||||| |||||||||||||| || ||| ||||| ||| | |||| |
|
|
| T |
15504316 |
tgtttggcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcaccaattcattaccatctatcattgttttgggaa |
15504415 |
T |
|
| Q |
298 |
tttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatcgaa |
397 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| ||||||||||||||| || ||| || |||||||| ||| | || |||||||||| |
|
|
| T |
15504416 |
tttttggtccattcttaatcacaagacaaagatcaaagtcaatggattgtatgaatatcattatactttccttccattccgtataattgttaccatcgaa |
15504515 |
T |
|
| Q |
398 |
gtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
446 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
15504516 |
gaatggtggctttgaaatggatcgtccttcattgatggttgtgtccata |
15504564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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