View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_low_7 (Length: 434)
Name: NF14084_low_7
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 32790140 - 32789735
Alignment:
| Q |
18 |
caggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattatgcgtgggaa |
117 |
Q |
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| T |
32790140 |
caggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattatgcgtgggaa |
32790041 |
T |
|
| Q |
118 |
ttgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagagaagttaagtagtttgagagg |
217 |
Q |
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| T |
32790040 |
ttgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagagaagtttagtagtttgagagg |
32789941 |
T |
|
| Q |
218 |
gtatcgtgtataaaatataaataggataaataaggatga-cgagggatctggtacatttgtttgttgtattttgaatggataaagtagcagccctttgtg |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789940 |
atatcgtgtataaaacataaataggataaataaggatgagcgagggatctggtacatttgtttgttgtattttgaatggataaagtagcagccctttgtg |
32789841 |
T |
|
| Q |
317 |
aaagggataccattagaggagagt---ctcctattttcattctttaaataaaac--nnnnnnnncttttcatttctttctattgattctccatccattgt |
411 |
Q |
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| T |
32789840 |
aaagggataccattagaggagagtctcctcctattttcattctttaaataaaacttttttttttcttttcatttctttctattgattctccatccattgt |
32789741 |
T |
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| Q |
412 |
cctttg |
417 |
Q |
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| T |
32789740 |
cctttg |
32789735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 48283173 - 48283083
Alignment:
| Q |
18 |
caggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattat |
108 |
Q |
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| T |
48283173 |
caggcacggctgatcattgaactctgagaaccttaccagggaccagctgattttgaaggaacctttagcagaaacatggtgaggagattat |
48283083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 48283032 - 48282975
Alignment:
| Q |
117 |
attgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaa |
174 |
Q |
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||||||| |||||| | |||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
48283032 |
attgttaggatctatccttatagttatttagttaagaagataagttaactagttagaa |
48282975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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