View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14085_high_1 (Length: 506)
Name: NF14085_high_1
Description: NF14085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14085_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 47037326 - 47037627
Alignment:
| Q |
11 |
catcatcaagataacatagttcacaaaaaacgcaagtgtcttcnnnnnnncatattgctatagagtgattagaatgattttgtttgtcaagcaacaacta |
110 |
Q |
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| T |
47037326 |
catcatcaagataatatagttcacaaaaaacgcaagtgtcttaaaaaaaacatattgatatagagtgattagaatgattttgtttgtcaagcaacaaccg |
47037425 |
T |
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| Q |
111 |
cctcaacgcgaattggagcaatgaccgtcaatatgcgagttgtgagtatttgcacacacttttacgctcaagctaataaaag-----agagtgagaggtt |
205 |
Q |
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| T |
47037426 |
cctcaatgcgaattggagcaataaccgtcaatatgcgagttgtgagtatttgcagacacttttacgctcaagctagtaaaagagcaaagagtgagaggtt |
47037525 |
T |
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| Q |
206 |
aaactttatattgttagtaccttttgatggctaacagtgcctttttataggcgttgatggtctattgagttggacctagtgtttggttctaagagtagtg |
305 |
Q |
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| T |
47037526 |
aaactttatattgtaattaccttttgatggctaacagtgcctttttataggtgttgatggtctattgacttggacctagtgtttgggtctaagagtagtg |
47037625 |
T |
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| Q |
306 |
tt |
307 |
Q |
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|| |
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| T |
47037626 |
tt |
47037627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 307 - 491
Target Start/End: Original strand, 47037650 - 47037834
Alignment:
| Q |
307 |
tctttatctgtatttggacttcgcgggattgaacctttgctcgacaggtgttgagtttgagcatttggcatgtccagcatacatattcataaactaaaat |
406 |
Q |
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| T |
47037650 |
tctttatctgtatttggacttcgcgggattgaacctttgctcgacaggtgttgagtttgagcatttggcatgtccagcatacatattcataaactaaaat |
47037749 |
T |
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| Q |
407 |
tcatatcaaattaaggaagaaaatatcaatcaacaaaatatggttattttgattcaattatctatgtccagccctgttacaaatt |
491 |
Q |
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| T |
47037750 |
tcatatcaaattaaggaagaaaatatcaatcaacaaaatatggttattttgattcaattatctatgtccagccctgttacaaatt |
47037834 |
T |
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