View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14085_high_2 (Length: 348)
Name: NF14085_high_2
Description: NF14085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14085_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 41 - 330
Target Start/End: Original strand, 33223562 - 33223852
Alignment:
| Q |
41 |
tcaatttttcaaataatactcggtgtccatgtgtcaatgtcgtatgcggtgtatgtgtgtcaatgtcagtgcttcataggcagctagtagatacaattaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33223562 |
tcaatttttcaaataatactcggtgttcatgtgtcagtgtcgtatgcggtgtatgtgtgtcaatgtcagtgcttcataggcagctagtagatacaatcaa |
33223661 |
T |
|
| Q |
141 |
atgaaataatcatcaacattagacacaaaaatcaactaaataaaataaaagggcacaactaaattcataagcataaagcatttaagcactaaagtttcaa |
240 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223662 |
atgcaataatcatcaacattagacacaaaaatcaagtaaataaaataaaagggcacaactaaattcataagcataaagcatttaagcactaaagtttcaa |
33223761 |
T |
|
| Q |
241 |
tcttatatgaagaataacaaataaaagcatgtggggttcgagtttgcaactaagactgcat-ataaaaataacagttctataagtgaatca |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33223762 |
tcttatatgaagaataacaaataaaagcatgtggggttcgagtttgcaactaagactgcataataaaaataacagttctataagtgaatca |
33223852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University