View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14085_low_3 (Length: 340)

Name: NF14085_low_3
Description: NF14085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14085_low_3
NF14085_low_3
[»] scaffold0586 (2 HSPs)
scaffold0586 (13-273)||(9576-9838)
scaffold0586 (277-324)||(9867-9914)
[»] chr6 (3 HSPs)
chr6 (13-273)||(19701143-19701410)
chr6 (31-200)||(21481428-21481599)
chr6 (277-324)||(19701439-19701486)
[»] chr8 (5 HSPs)
chr8 (41-273)||(10637660-10637893)
chr8 (41-273)||(32717701-32717934)
chr8 (277-324)||(32717625-32717672)
chr8 (13-42)||(10637606-10637635)
chr8 (13-42)||(32717959-32717988)
[»] chr1 (4 HSPs)
chr1 (31-273)||(22893804-22894052)
chr1 (41-161)||(44306142-44306261)
chr1 (279-324)||(22894083-22894128)
chr1 (13-42)||(22893761-22893790)
[»] chr7 (3 HSPs)
chr7 (31-198)||(13331485-13331653)
chr7 (31-198)||(13342400-13342568)
chr7 (46-161)||(33430221-33430337)
[»] chr5 (1 HSPs)
chr5 (31-198)||(5671957-5672124)
[»] chr2 (2 HSPs)
chr2 (41-161)||(6049925-6050045)
chr2 (31-200)||(26661510-26661681)
[»] chr4 (1 HSPs)
chr4 (46-161)||(13893695-13893810)
[»] chr3 (1 HSPs)
chr3 (47-152)||(15761974-15762079)


Alignment Details
Target: scaffold0586 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 9576 - 9838
Alignment:
Q  13 attcccgctaattttttcacccatgatctt-gtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatt 111  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  9576 attcccgctaattttttcacccatgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatt 9675  T
Q  112 tcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg-cattttgtcttctgatgttgcttattgctttgttactaaatga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||    
T  9676 tcattttaattcttccattactcaacatagatttggtgatttatatcatttctctgtttttttgtcttctgatgttgcttattgctttgttacttaatga 9775  T
Q  211 atttgtcatttctctgcttacttattgcttctgatgtcgcatcatttctctgtttgttttttg 273  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||    
T  9776 atttgtcatttctctgcttgcttattgcttttgatgtcgcatcatttatctgtttgctttttg 9838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 9867 - 9914
Alignment:
Q  277 ctttgttacttaatgaattagttatgtacagattcaattgttttaaat 324  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  9867 ctttgatacttaatgaattagtcatgtacagattcaattgttttaaat 9914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 19701143 - 19701410
Alignment:
Q  13 attcccgctaattttttcacccatgatctt-gtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatt 111  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  19701143 attcccactaattttttcacccatgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatt 19701242  T
Q  112 tcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg------cattttgtcttctgatgttgcttattgctttgttacta 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  19701243 tcattttaattcttccattactcaacatagatttgttgatttatatcatttctctgatttttttttttgtcttctgatgttgcttattgctttgttacta 19701342  T
Q  206 aatgaatttgtcatttctctgcttacttattgcttctgatgtcgcatcatttctctgtttgttttttg 273  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||    
T  19701343 aatgaatttgtcatttctctgcttgcttattgcttctgatgtcacatcatttatctgtttgctttttg 19701410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 21481428 - 21481599
Alignment:
Q  31 acccatgatcttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccatt 130  Q
    ||||||||||||   |||| |||||||| |||||   ||||||||| |||||||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  21481428 acccatgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccatt 21481527  T
Q  131 actcaacatagatttggtgatttatatcatttctctg-cattttgtcttctg-atgttgcttattgctttgt 200  Q
    |||||||||||||||||||||| |||||| |||||||   |||||||| |||  ||||||||||||||||||    
T  21481528 actcaacatagatttggtgattgatatcaattctctgtttttttgtctgctgtttgttgcttattgctttgt 21481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 19701439 - 19701486
Alignment:
Q  277 ctttgttacttaatgaattagttatgtacagattcaattgttttaaat 324  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  19701439 ctttgttacttaacgaattagtcatgtatagattcaattgttttaaat 19701486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 273
Target Start/End: Original strand, 10637660 - 10637893
Alignment:
Q  41 ttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacata 140  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10637660 ttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaacata 10637759  T
Q  141 gatttggtgatttatatcatttctctg-cattttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttctctgcttacttattgct 239  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  10637760 gatttggtgatttatatcatttctctgtttttttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttccctgcttgcttattgct 10637859  T
Q  240 tctgatgtcgcatcatttctctgtttgttttttg 273  Q
    | |||||||||||||||| ||| |||| ||||||    
T  10637860 tttgatgtcgcatcatttatctttttgctttttg 10637893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 32717934 - 32717701
Alignment:
Q  41 ttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacata 140  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717934 ttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacata 32717835  T
Q  141 gatttggtgatttatatcatttctctg-cattttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttctctgcttacttattgct 239  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |    
T  32717834 gatttggtgatttatatcatttctctgtttttttgtcttctgatgttgcttattgctttgttgctaaatgaatttgtcatttctctgcttgcttattgtt 32717735  T
Q  240 tctgatgtcgcatcatttctctgtttgttttttg 273  Q
    | |||||| ||||||||| |||||||| ||||||    
T  32717734 tttgatgttgcatcatttatctgtttgctttttg 32717701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 32717672 - 32717625
Alignment:
Q  277 ctttgttacttaatgaattagttatgtacagattcaattgttttaaat 324  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  32717672 ctttgttacttaatgaattagtcatgtacatattcaattgttttaaat 32717625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 10637606 - 10637635
Alignment:
Q  13 attcccgctaattttttcacccatgatctt 42  Q
    ||||||||||||||||||||||||||||||    
T  10637606 attcccgctaattttttcacccatgatctt 10637635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 32717988 - 32717959
Alignment:
Q  13 attcccgctaattttttcacccatgatctt 42  Q
    ||||||||||||||||||||||||||||||    
T  32717988 attcccgctaattttttcacccatgatctt 32717959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 273
Target Start/End: Original strand, 22893804 - 22894052
Alignment:
Q  31 acccatgatctt-gtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccat 129  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22893804 acccatgatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccat 22893903  T
Q  130 tactcaacatagatttggtgatttatatcatttctctg-----cattttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttctc 224  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22893904 tactcaacatagatttggtgatttatatcatttctctgtttttttttttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttctc 22894003  T
Q  225 tgcttacttattgcttctgatgtcgcatcatttctctgtttgttttttg 273  Q
    || || |||||||||||||||||||||| |||| |||||||| ||||||    
T  22894004 tgtttgcttattgcttctgatgtcgcataatttatctgtttgctttttg 22894052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 44306142 - 44306261
Alignment:
Q  41 ttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacata 140  Q
    |||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||    
T  44306142 ttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatc-aaattcttttcaattcttccattactcaacata 44306240  T
Q  141 gatttggtgatttatatcatt 161  Q
    |||||||| ||| ||||||||    
T  44306241 gatttggtcattgatatcatt 44306261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 22894083 - 22894128
Alignment:
Q  279 ttgttacttaatgaattagttatgtacagattcaattgttttaaat 324  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  22894083 ttgttacttaatgaattagtcatgtacaaattcaattgttttaaat 22894128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 22893761 - 22893790
Alignment:
Q  13 attcccgctaattttttcacccatgatctt 42  Q
    ||||||||||||||||||||||||||||||    
T  22893761 attcccgctaattttttcacccatgatctt 22893790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 13331653 - 13331485
Alignment:
Q  31 acccatgatcttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccatt 130  Q
    ||||||||||||   ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  13331653 acccatgatctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccatt 13331554  T
Q  131 actcaacatagatttggtgatt-tatatcatttctctgcattttgtcttctgatgttgcttattgcttt 198  Q
    ||||||||||||||||||||||  |||  |||||||| | |||| ||| ||| ||||||||||||||||    
T  13331553 actcaacatagatttggtgattggataaaatttctcttctttttttctgctgttgttgcttattgcttt 13331485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 13342568 - 13342400
Alignment:
Q  31 acccatgatcttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccatt 130  Q
    ||||||||||||   ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  13342568 acccatgatctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccatt 13342469  T
Q  131 actcaacatagatttggtgatt-tatatcatttctctgcattttgtcttctgatgttgcttattgcttt 198  Q
    ||||||||||||||||||||||  |||  |||||||| | |||| ||| ||| ||||||||||||||||    
T  13342468 actcaacatagatttggtgattggataaaatttctcttctttttttctgctgttgttgcttattgcttt 13342400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 33430337 - 33430221
Alignment:
Q  46 gtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaa-tttcattttaattcttccattactcaacatagatt 144  Q
    ||||||||||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||||| |||  |||||||  |||||||||||||| ||||||    
T  33430337 gtgttcatcaagtgtttgctatttggattttgaatttcactattctcttcaaggtaccatctaattttttttttaatcgttccattactcaacgtagatt 33430238  T
Q  145 tggtgatttatatcatt 161  Q
    || ||||| | ||||||    
T  33430237 tgatgattgacatcatt 33430221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 5672124 - 5671957
Alignment:
Q  31 acccatgatcttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccatt 130  Q
    ||||||||||||   ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  5672124 acccatgatctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccatt 5672025  T
Q  131 actcaacatagatttggtgatttatatcatttctctgcattttgtcttctgatgttgcttattgcttt 198  Q
    ||||||||||||||||||||||  ||  |||||||| | |||| |||  || ||||||||||||||||    
T  5672024 actcaacatagatttggtgattggtaaaatttctcttctttttttctgttgttgttgcttattgcttt 5671957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 6049925 - 6050045
Alignment:
Q  41 ttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacata 140  Q
    |||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  6049925 ttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacata 6050024  T
Q  141 gatttggtgatttatatcatt 161  Q
    |||||||||||| ||||||||    
T  6050025 gatttggtgattgatatcatt 6050045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 26661510 - 26661681
Alignment:
Q  31 acccatgatcttgtagtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccatt 130  Q
    ||||||||||||   |||| ||||||||||||||   ||||||||| |||||||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  26661510 acccatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccatt 26661609  T
Q  131 actcaacatagatttggtgatttatatcatttctctg-cattttgtcttctg-atgttgcttattgctttgt 200  Q
    |||||||||||||||||||||| |||||| |||||||   |||||||| |||  ||||||||||||||||||    
T  26661610 actcaacatagatttggtgattgatatcaattctctgtttttttgtctgctgtttgttgcttattgctttgt 26661681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 13893810 - 13893695
Alignment:
Q  46 gtgttcatcaactgcttgctgtttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 145  Q
    |||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  13893810 gtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagattt 13893711  T
Q  146 ggtgatttatatcatt 161  Q
    ||||||| ||||||||    
T  13893710 ggtgattgatatcatt 13893695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 15762079 - 15761974
Alignment:
Q  47 tgttcatcaactgcttgctg-tttgggttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 145  Q
    ||||||||||||  |||||  ||||||||||| |||||||| |||| ||||| ||||||||||||||||| | |||||||| ||||||||||||||||||    
T  15762079 tgttcatcaactatttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagattt 15761981  T
Q  146 ggtgatt 152  Q
    |||||||    
T  15761980 ggtgatt 15761974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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