View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14085_low_4 (Length: 337)
Name: NF14085_low_4
Description: NF14085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14085_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 50696 - 50499
Alignment:
| Q |
14 |
tcacaaactcttgaggatgtagcaaaccacatctcatctattactgtcttttatccaacgtttaatgggagtagataaatataacgactttctgatgcac |
113 |
Q |
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| T |
50696 |
tcacaaactcttaaggaagtagcaaaccacatctcatctattactgtcttttatccaacgtttaatgggagtagataaatataacgactttctgatgcac |
50597 |
T |
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| Q |
114 |
aaaaactccagaactttacttccaacatatctagtttgattacatgttaaaatagtatatgtgctaaaataaaagaataaaaatatgatcattatccg |
211 |
Q |
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| T |
50596 |
aaaaactccagaactttacttccaacatatctagtttgattacatgttaaaatagtatatgtgctaaaataaaagaataaaaatatgatcattatccg |
50499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 50428 - 50373
Alignment:
| Q |
282 |
attgcccaaacagtcggacgataatttaaaatatcgtttgtgtttgataaaccgcc |
337 |
Q |
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| T |
50428 |
attgcccaaacagtcggatgataatttaaaatatcgtttgtgtttgataaaccgcc |
50373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 507215 - 507171
Alignment:
| Q |
158 |
tgttaaaatagtatatgtgctaaaataaaagaataaaaatatgat |
202 |
Q |
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| T |
507215 |
tgttaaaatagtgcatgtgctaaaataaaagaatacaaagatgat |
507171 |
T |
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