View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14086_high_4 (Length: 215)
Name: NF14086_high_4
Description: NF14086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14086_high_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0586 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 15762186 - 15761984
Alignment:
| Q |
13 |
aaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatcctatgat |
112 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
15762186 |
aaaataccatttttgtccttgtcattcgtgccattctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgat |
15762087 |
T |
|
| Q |
113 |
ctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15762086 |
ctttgtatgttcatcaactatttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacat |
15761987 |
T |
|
| Q |
213 |
aga |
215 |
Q |
| |
|
||| |
|
|
| T |
15761986 |
aga |
15761984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 13342657 - 13342457
Alignment:
| Q |
13 |
aaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatcctatgat |
112 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| || |||||||||||| | | || ||||| |
|
|
| T |
13342657 |
aaaaaaccatttttgcccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgat |
13342560 |
T |
|
| Q |
113 |
ctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacat |
212 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| | ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13342559 |
ctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacat |
13342460 |
T |
|
| Q |
213 |
aga |
215 |
Q |
| |
|
||| |
|
|
| T |
13342459 |
aga |
13342457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 13331742 - 13331542
Alignment:
| Q |
13 |
aaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatcctatgat |
112 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| || |||||||||||| | | || ||||| |
|
|
| T |
13331742 |
aaaaaaccatttttgcccttgccattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgat |
13331645 |
T |
|
| Q |
113 |
ctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacat |
212 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| | ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13331644 |
ctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacat |
13331545 |
T |
|
| Q |
213 |
aga |
215 |
Q |
| |
|
||| |
|
|
| T |
13331544 |
aga |
13331542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 33430336 - 33430271
Alignment:
| Q |
120 |
tgttcatcaactgtttgctaatttgggttttga-tttcactattcttttcaaagtaccatctaattt |
185 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
33430336 |
tgttcatcaagtgtttgcta-tttggattttgaatttcactattctcttcaaggtaccatctaattt |
33430271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 5672213 - 5672013
Alignment:
| Q |
13 |
aaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatcctatgat |
112 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| || |||||||||||| | | || ||||| |
|
|
| T |
5672213 |
aaaaaaccatttttgcccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgat |
5672116 |
T |
|
| Q |
113 |
ctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacat |
212 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| | ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5672115 |
ctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacat |
5672016 |
T |
|
| Q |
213 |
aga |
215 |
Q |
| |
|
||| |
|
|
| T |
5672015 |
aga |
5672013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 26661435 - 26661621
Alignment:
| Q |
29 |
ccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatca |
128 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||| |||||||| | || ||||||||||| ||| ||||| |
|
|
| T |
26661435 |
ccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatca |
26661534 |
T |
|
| Q |
129 |
actgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacataga |
215 |
Q |
| |
|
|||| |||| |||| || ||||||||||||| |||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26661535 |
actgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacataga |
26661621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 6049931 - 6050026
Alignment:
| Q |
120 |
tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacataga |
215 |
Q |
| |
|
||||||||||||| |||||| ||||| | | ||||||||| |||| ||||| |||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
6049931 |
tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacataga |
6050026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 21481353 - 21481539
Alignment:
| Q |
29 |
ccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatca |
128 |
Q |
| |
|
||||| |||||| || ||||||||||||||||||||||||||||||||||| ||| | |||| |||||||| | || ||||||||||| ||| ||||| |
|
|
| T |
21481353 |
ccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatca |
21481452 |
T |
|
| Q |
129 |
actgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacataga |
215 |
Q |
| |
|
||| |||| |||| || ||||||||||||| |||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21481453 |
actacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaacataga |
21481539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 19701165 - 19701273
Alignment:
| Q |
108 |
atgatctttgta-tgttcatcaactgtttgctaatttgggtttt-gatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac |
205 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||| ||||| ||||||||| |||| ||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
19701165 |
atgatctttgtagtgttcatcaactgcttgct-atttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattac |
19701263 |
T |
|
| Q |
206 |
tcaacataga |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
19701264 |
tcaacataga |
19701273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 32717938 - 32717833
Alignment:
| Q |
111 |
atctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactca |
208 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| |||||| |||||||| |||| ||||| ||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
32717938 |
atctttgtagtgttcatcaactgcttgctg-tttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactca |
32717840 |
T |
|
| Q |
209 |
acataga |
215 |
Q |
| |
|
||||||| |
|
|
| T |
32717839 |
acataga |
32717833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 10637656 - 10637761
Alignment:
| Q |
111 |
atctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactca |
208 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| |||||| |||||||| |||| ||||| ||| ||||||||||||| | ||||||||||||||||| |
|
|
| T |
10637656 |
atctttgtagtgttcatcaactgcttgctg-tttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactca |
10637754 |
T |
|
| Q |
209 |
acataga |
215 |
Q |
| |
|
||||||| |
|
|
| T |
10637755 |
acataga |
10637761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 9598 - 9706
Alignment:
| Q |
108 |
atgatctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac |
205 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| | |||| |||||| |||||||| |||| ||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
9598 |
atgatctttgtagtgttcatcaactgcttgttg-tttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattac |
9696 |
T |
|
| Q |
206 |
tcaacataga |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
9697 |
tcaacataga |
9706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 22893808 - 22893916
Alignment:
| Q |
108 |
atgatctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac |
205 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||| |||||| |||||||| |||| ||||| ||| ||||||||||||| | |||||||||||||| |
|
|
| T |
22893808 |
atgatctttgtagtgttcatcaactgcttgctg-tttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattac |
22893906 |
T |
|
| Q |
206 |
tcaacataga |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
22893907 |
tcaacataga |
22893916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 44306148 - 44306242
Alignment:
| Q |
120 |
tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacataga |
215 |
Q |
| |
|
||||||||||||| |||||| ||||| | | ||||||||| |||| ||||| |||||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
44306148 |
tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatc-aaattcttttcaattcttccattactcaacataga |
44306242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 13893809 - 13893714
Alignment:
| Q |
120 |
tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacataga |
215 |
Q |
| |
|
||||||||||||| ||| || ||||| | | ||||||||| |||| ||||| |||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
13893809 |
tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacataga |
13893714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University