View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14086_low_2 (Length: 383)
Name: NF14086_low_2
Description: NF14086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14086_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 1347045 - 1347202
Alignment:
| Q |
15 |
ggctatagtaccatatatctattttggaagtaacaatgtttcagcaaaaataggagtggcctagtggtgaaagttatgaagggttgttgtcaggtagtcg |
114 |
Q |
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| T |
1347045 |
ggctatagtaccatatatctattttggaagtaacaatgtt-cagcaaaaataggagtggcctagtggtgaaagttatgaagggttgttgtcaggtagttg |
1347143 |
T |
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| Q |
115 |
gtttgaagtcataacagcagttagtgcaattgtc-gagatatgagactgagtcttcctt |
172 |
Q |
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| T |
1347144 |
gtttgaagtcataactgcagttagtgcaattgtctgagatgtgagactgagtcttcctt |
1347202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 229 - 367
Target Start/End: Original strand, 1348487 - 1348624
Alignment:
| Q |
229 |
cttaacctttctatttgtaaccctaggaaccacccatgagaagctccagcggttggatctacactatgtcctgcacaaatcaatatcaacctattttgta |
328 |
Q |
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| T |
1348487 |
cttaacctttctatttgtaaccctaggaaccacccatgagaagctcca-cggttggatctacactatgtcctgcacaaatcaatatcaacctattttgta |
1348585 |
T |
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| Q |
329 |
taaccaaggctcacgattgattgtaactaacaatgtctt |
367 |
Q |
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| T |
1348586 |
taaccaaggctcacgattgattgtaactaacaatgtctt |
1348624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 1347234 - 1347292
Alignment:
| Q |
174 |
tcaatgaggcaaccaccaaagatgaatatagttgtcagagtgaagacaaaaaacactta |
232 |
Q |
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| T |
1347234 |
tcaatgaggcaaccatcaaagatgaatatagttgtcggagtgaagacaaaaaacactta |
1347292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 16639525 - 16639598
Alignment:
| Q |
28 |
tatatctattttggaagtaacaatgtttcagcaaaaataggagtggcctagtggtgaaagttatgaagggttgt |
101 |
Q |
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| T |
16639525 |
tatatctattttggaagcaacaatatttcaacaaaaataagagttgcctagtattgaaaattatgaagtgttgt |
16639598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 48260597 - 48260551
Alignment:
| Q |
36 |
ttttggaagtaacaatgtttcagcaaaaataggagtggcctagtggt |
82 |
Q |
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| T |
48260597 |
ttttggaagtaacaatatttcaacaaaaatagaagtggcatagtggt |
48260551 |
T |
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