View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14087_low_1 (Length: 509)
Name: NF14087_low_1
Description: NF14087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14087_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 29880579 - 29880101
Alignment:
| Q |
18 |
atgtattcattcatttctgattatataattataaccttacatcaatcagaataatgtcattaaattatgaatatattaatcgtgtgacagccataaccaa |
117 |
Q |
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| T |
29880579 |
atgtattcattcatttctgattatataat---aaccttacatcaatcagaataatgtcattaaattatgaatatattaatcgtgtgacagccataaccaa |
29880483 |
T |
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| Q |
118 |
tcatcaagtagccaactaggcagcagaagcaatcgttttcatcaaattccttgtcaacatttataattcgtgatattctttctttatttttgttttattt |
217 |
Q |
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| T |
29880482 |
tcatcaagtagccaactaggcagcagaagcaatcgttttcatcaaattccttgtcaacatttataattcgtgatattctttctttatttttgttttattt |
29880383 |
T |
|
| Q |
218 |
gtgatattaatttgatgaggacccaaatggaaaattccaaattggtggttactttcaaatttcagttgaacctggctccaaaaattagtctattgacggg |
317 |
Q |
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| T |
29880382 |
gtgatattaatttgatgaggacccaaatggaaaattccaaattggtggttactttcaaatttcagttgaacctggctccaaaaattagtctattgacggg |
29880283 |
T |
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| Q |
318 |
acttcctataatttatataaagatatgtatgtatatctctatctcatacaactttcacatatctgatcctatttaattacacttaatttgtggcctaggg |
417 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29880282 |
acttcctataatttatatatagatatgtatgtatatctctatctcatacaactttcacatatctgatcctatttaattacacttaatttgtggcctaggg |
29880183 |
T |
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| Q |
418 |
ttgagggaaatgaacaatatatatttccattttgagtttggcctc--tacgatttatgcacaaatttgaagaactaaatatt |
497 |
Q |
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| T |
29880182 |
ttgagggaaatgaacaatatatatttccattttgagtttggcctctatacgatttatgcacaaatttgaagaactaaatatt |
29880101 |
T |
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