View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14087_low_5 (Length: 210)
Name: NF14087_low_5
Description: NF14087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14087_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 38879559 - 38879692
Alignment:
| Q |
1 |
ggagaaggggatgtgaagatgaaaacacagcataaaaatggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattcgtgtgattagca |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38879559 |
ggagaaggggatatgaagatgaaaacacagcataaaaatggagagaaatatgtttgataaggtcaactaagcataagaaatagcattcgtgtgattagca |
38879658 |
T |
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| Q |
101 |
cgaaaaagttatcgtgctatttagcatttttctt |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38879659 |
cgaaaaagttatcgtgctatttagcatttttctt |
38879692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 25910622 - 25910491
Alignment:
| Q |
1 |
ggagaaggggatgtgaagatgaaaacacagcataaaaatggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattcgtgtgattagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
25910622 |
ggagaaggggatgtgaagatgaaaacacagcataaaaatggagagaaacgtgtttgataaggtcaactaagcataagaaatagcattcgcgtgattagca |
25910523 |
T |
|
| Q |
101 |
cgaaaaagttatcgtgctatttagcatttttc |
132 |
Q |
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|||||| |||||| |||||||||||||||||| |
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| T |
25910522 |
cgaaaatgttatcctgctatttagcatttttc |
25910491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 33368662 - 33368616
Alignment:
| Q |
133 |
ttcctatttatatatgagacacgaagaccattgtataacgtgaaaaa |
179 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33368662 |
ttcctatttatatataagacacgaagaccattgtataacgtgaaaaa |
33368616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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