View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14088_low_1 (Length: 602)

Name: NF14088_low_1
Description: NF14088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14088_low_1
NF14088_low_1
[»] chr4 (2 HSPs)
chr4 (124-602)||(31443452-31443930)
chr4 (18-67)||(31443980-31444029)


Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 124 - 602
Target Start/End: Complemental strand, 31443930 - 31443452
Alignment:
Q  124 cttcttgttattattcttcttcatcattcatcctctatcaccactaactaaccaaccaccatagatggcgcggcccgcgcgggaaccccgcatcaactgc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31443930 cttcttgttattattcttcttcatcattcatcctctatcaccactaacaaaccaaccaccgtagatggcgcggcccgcgcgggaaccccgcatcaactgc 31443831  T
Q  224 tgcacctgctgcacaagcttcatcaccagcacaggcctcaccatcctcttcctctggctcacactaagaactcaacaaccaaaatgcttcattcagtcac 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31443830 tgcacctgctgcacaagcttcatcaccagcacaggcctcaccatcctcttcctctggctcacactaagaactcaacaaccaaaatgcttcattcaatcac 31443731  T
Q  324 tctaccttccttctctcaacaaaactatcacttccaatcacaaacactccatcaacaacactatcatcttcaacctcaaactcgcaaaccaaaacgaaga 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31443730 tctaccttccttctctcaacaaaactatcacttccaatcacaaacactccatcaacaacactatcatcttcaacctcaaactcgcaaaccaaaacgaaga 31443631  T
Q  424 caaaggtgtatactacgacgccattcgtcttacattcgctctcttcctcgacgtcaacaccacgcgtccactagccaactccactctcgacggtttctac 523  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31443630 caaaggtgtatactacgacgccatttgtcttacattcgctctcttcctcgacgtcaacaccacgcgtccactagccaactccactctcgacggtttctac 31443531  T
Q  524 caaggacatggtaaaaccgctgagaaatggagttctgccgaggcgcgtggtggtggtggtggagtggacggtacagtgc 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  31443530 caaggacatggtaaaaccgctgagaaatggagttctgccgaggcgcgtggtggtggtggtggagtgaaccgtacagtgc 31443452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 31444029 - 31443980
Alignment:
Q  18 acaaacttgtaaaggacacataatttcatattccaaaaccatcacaagag 67  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31444029 acaatcttgtaaaggacacataatttcatattccaaaaccatcacaagag 31443980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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