View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14088_low_3 (Length: 381)
Name: NF14088_low_3
Description: NF14088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14088_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 31703835 - 31703475
Alignment:
| Q |
17 |
aaattgtaatcgaaacttgctatcaaaatttgggtaaacatatcactaatcaaataccaaatatacaaaaaacacaattccaacctgcatattgcatgca |
116 |
Q |
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| T |
31703835 |
aaattgtaatcgaaacttgctatcaaaatttgggttaacatatcactaatcaaataccaaatatacaaaaaacacaattccaacctgcatattgcatgca |
31703736 |
T |
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| Q |
117 |
accatctgagctccatacatccaccctaaaagtggcctaaaatttgtggatcggacacgttctcctttaggataaattctgaggatatttttctgtgtga |
216 |
Q |
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| T |
31703735 |
accatctgagctccatacatccaccctaaaagtggcctaaaatttgaggatcggacacgttctcctttaggataaattctgaggatatttttctgtgtga |
31703636 |
T |
|
| Q |
217 |
acctgaaaagcatatacatgtgaattaagatggtaggttttattcagcatgtcgtaggtgttgtcatacggtagaaatgctaatcgtcaagtaagtttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31703635 |
acctgaaaagcatatacatgtgaattaagatggtaggttttattcagcatgtcgtaggtgttgtcatacggtagaaatgctaattgtcaagtaagtttga |
31703536 |
T |
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| Q |
317 |
taggcacctaattagatcaggcccatgagatttagaagcagttttgagtttcttctcactc |
377 |
Q |
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| T |
31703535 |
taggcacctaattaggtcaggcccatgagatttagaagcagttttgagtttcttctcactc |
31703475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 31653429 - 31653278
Alignment:
| Q |
79 |
atacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgtggatcggacacgttc |
178 |
Q |
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|||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
31653429 |
ataccaaaaacacaattctaacctgcatattgaatgcaaccatctgagctccatacatccaccctaaatgtggcctaaaatttgtggattgaacacgttc |
31653330 |
T |
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| Q |
179 |
tcctttaggataaattctgaggatatttttctgtgtgaacctgaaaagcata |
230 |
Q |
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| T |
31653329 |
tcctttaggataaattctaaggatatttttttgcgtgaacctgaaaaacata |
31653278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 377
Target Start/End: Complemental strand, 31653235 - 31653145
Alignment:
| Q |
287 |
gtagaaatgctaatcgtcaagtaagtttgataggcacctaattagatcaggcccatgagatttagaagcagttttgagtttcttctcactc |
377 |
Q |
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|||||||||||||| || | |||||||||||| |||||||||| || | |||||||| | |||||||| ||||||||||||||||||| |
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| T |
31653235 |
gtagaaatgctaatgttcgtgaaagtttgataggtacctaattagctcggctccatgagactcagaagcagatttgagtttcttctcactc |
31653145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 35509024 - 35508955
Alignment:
| Q |
98 |
aacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgtggat |
167 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| | | ||||| | |||||||||||| |
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| T |
35509024 |
aacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggcttgaaatttgtggat |
35508955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 35522758 - 35522703
Alignment:
| Q |
99 |
acctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcct |
154 |
Q |
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|||||||| || |||| |||||||||||||||||||||||||||| | ||||||| |
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| T |
35522758 |
acctgcatgttaaatgcgaccatctgagctccatacatccaccctatatgtggcct |
35522703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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