View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14088_low_4 (Length: 331)

Name: NF14088_low_4
Description: NF14088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14088_low_4
NF14088_low_4
[»] chr7 (1 HSPs)
chr7 (7-302)||(30115078-30115377)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 30115078 - 30115377
Alignment:
Q  7 tgaatcccatggtcaaaattttcctgccaagttggttgctgcattaggtaataatggattaaaatacccttatttaatttctagtatttgtaat----tg 102  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    ||    
T  30115078 tgaatcccatggtcaaaagtttcctgccaagttggttgctgcattaggtaatattggactaaaatacccttatttaatttctagtatttgtaattaattg 30115177  T
Q  103 taacagaaatgtctaagttctttgtcacaactaagggtatagctgaaaaatcactcactagacattggatttctaaggtatcaatagttttgaaacaaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30115178 taacagaaatgtctaagttctttgtcacaactaagggtatagctgaaaaatcactcactagacattggatttctaaggtatcaatagttttgaaacaaaa 30115277  T
Q  203 ggaagtgatagattagaaaacaaattgagcggtgaattaatgctagnnnnnnnnaatccttttttggcccctagagagaaatagactaaacatgtaatag 302  Q
    |||||||||||||||||||||||||||||  |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  30115278 ggaagtgatagattagaaaacaaattgagttgtgaattaatgctagttttttttaatccttttttggcccctagagagaaatagactaaacatgtaatag 30115377  T

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