View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14089_high_12 (Length: 319)
Name: NF14089_high_12
Description: NF14089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14089_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 4761648 - 4761331
Alignment:
| Q |
1 |
aatgtttct-gtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattgcgtg |
99 |
Q |
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| T |
4761648 |
aatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattgcgtg |
4761549 |
T |
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| Q |
100 |
tatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaacaaaccccgcctattg |
199 |
Q |
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| T |
4761548 |
tatgaat--gtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaataaaccctgcctattg |
4761451 |
T |
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| Q |
200 |
atattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaaaatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761450 |
atattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaaaatg |
4761351 |
T |
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| Q |
300 |
gttctggttccacttagtca |
319 |
Q |
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| T |
4761350 |
attctggttccacttagtca |
4761331 |
T |
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