View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14089_high_1_N (Length: 1190)

Name: NF14089_high_1_N
Description: NF14089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14089_high_1_N
NF14089_high_1_N
[»] chr8 (3 HSPs)
chr8 (45-178)||(12934377-12934510)
chr8 (571-744)||(12933811-12933984)
chr8 (684-721)||(36999937-36999974)
[»] chr7 (2 HSPs)
chr7 (45-178)||(15300163-15300296)
chr7 (714-751)||(6692086-6692123)
[»] chr4 (5 HSPs)
chr4 (45-178)||(28608093-28608227)
chr4 (45-178)||(14177647-14177780)
chr4 (571-744)||(28608621-28608794)
chr4 (594-744)||(14177081-14177231)
chr4 (683-736)||(20706182-20706234)
[»] chr6 (2 HSPs)
chr6 (714-751)||(796698-796735)
chr6 (714-751)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (714-751)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 12934510 - 12934377
Alignment:
Q  45 atccacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattg 144  Q
    |||||||| || |||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || |||||||    
T  12934510 atccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattg 12934411  T
Q  145 catacatcaagcttccgactgctgaagaataagg 178  Q
    |||||||||| || || |||||||| || |||||    
T  12934410 catacatcaaactcccaactgctgaggagtaagg 12934377  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 571 - 744
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  571 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 669  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  670 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 744  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 684 - 721
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  684 ggttgctccatataaatctcctcttccaaatctccatg 721  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr7 (Bit Score: 50; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 15300296 - 15300163
Alignment:
Q  45 atccacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattg 144  Q
    |||||||| ||  ||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || |||||||    
T  15300296 atccacttcacaacttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattg 15300197  T
Q  145 catacatcaagcttccgactgctgaagaataagg 178  Q
    |||||||||| || || |||||||| || |||||    
T  15300196 catacatcaaactcccaactgctgaggagtaagg 15300163  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 714 - 751
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  714 tctccatgaagaaatgcagttttcacatccaactgctc 751  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 28608093 - 28608227
Alignment:
Q  45 atccacttgactgcttcccaatgttccttt-ccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccatt 143  Q
    |||||||| || |||||||||||||| ||| || |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || ||||||    
T  28608093 atccacttcacagcttcccaatgttctttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccatt 28608192  T
Q  144 gcatacatcaagcttccgactgctgaagaataagg 178  Q
    ||||||||||| || || |||||||| || |||||    
T  28608193 gcatacatcaaactcccaactgctgaggagtaagg 28608227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 14177780 - 14177647
Alignment:
Q  45 atccacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattg 144  Q
    |||||||| || |||||||| ||||| ||||| |||||   |||||||||||| ||||| |||||| | ||||||||||| || || || || |||||||    
T  14177780 atccacttcacagcttcccagtgttcttttcccggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattg 14177681  T
Q  145 catacatcaagcttccgactgctgaagaataagg 178  Q
    |||||||||| || || |||||||| || |||||    
T  14177680 catacatcaaactcccaactgctgaggagtaagg 14177647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 571 - 744
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  571 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 669  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  670 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 744  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 594 - 744
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  594 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 692  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  693 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 744  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 683 - 736
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  683 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 736  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 714 - 751
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  714 tctccatgaagaaatgcagttttcacatccaactgctc 751  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 714 - 751
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  714 tctccatgaagaaatgcagttttcacatccaactgctc 751  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 714 - 751
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  714 tctccatgaagaaatgcagttttcacatccaactgctc 751  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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