View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14089_high_5 (Length: 468)

Name: NF14089_high_5
Description: NF14089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14089_high_5
NF14089_high_5
[»] chr1 (4 HSPs)
chr1 (75-447)||(48538179-48538556)
chr1 (155-272)||(2089605-2089724)
chr1 (379-447)||(25155105-25155173)
chr1 (379-447)||(14890906-14890973)
[»] chr8 (4 HSPs)
chr8 (155-272)||(16820824-16820943)
chr8 (379-447)||(8545627-8545696)
chr8 (388-449)||(39379854-39379915)
chr8 (379-431)||(9476298-9476350)
[»] chr7 (7 HSPs)
chr7 (155-272)||(16678798-16678917)
chr7 (155-272)||(17653034-17653153)
chr7 (380-447)||(37217752-37217819)
chr7 (379-447)||(3156835-3156903)
chr7 (380-443)||(3773817-3773880)
chr7 (380-447)||(23475542-23475609)
chr7 (379-447)||(31345273-31345341)
[»] chr5 (2 HSPs)
chr5 (155-266)||(20464365-20464478)
chr5 (379-447)||(38972664-38972732)
[»] chr4 (7 HSPs)
chr4 (155-272)||(2443119-2443238)
chr4 (379-443)||(33616398-33616462)
chr4 (384-443)||(37926314-37926373)
chr4 (380-438)||(8844075-8844133)
chr4 (380-438)||(8857039-8857097)
chr4 (380-434)||(53906966-53907020)
chr4 (379-443)||(42907635-42907699)
[»] chr3 (3 HSPs)
chr3 (105-199)||(46868930-46869023)
chr3 (155-196)||(25484074-25484115)
chr3 (229-272)||(25484446-25484489)
[»] chr6 (3 HSPs)
chr6 (379-447)||(2126900-2126968)
chr6 (379-447)||(9402347-9402415)
chr6 (413-445)||(10925723-10925755)
[»] chr2 (4 HSPs)
chr2 (379-445)||(34544592-34544658)
chr2 (379-447)||(29657014-29657082)
chr2 (379-443)||(30696667-30696731)
chr2 (379-447)||(34214934-34215002)
[»] scaffold0244 (1 HSPs)
scaffold0244 (379-447)||(4858-4926)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 75 - 447
Target Start/End: Complemental strand, 48538556 - 48538179
Alignment:
Q  75 tttatatattgaatttccctgacctttaactgtgtacatgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataatct 174  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48538556 tttatatattgaatttccctgacctttaactatgtacctgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataattt 48538457  T
Q  175 gaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgaccaaaacgtggctccgccact 271  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||| |||| ||    
T  48538456 gaggaggttcaaaatgaataaaaaagagtaatattgaaataatttaaaaactttgaggggatgcagctgcaccagctgaccaaaacttggcttcgccgct 48538357  T
Q  272 gtccgttatcctatccatactcactcagtagggatgggaaatcgaatctcattctgcctcaggtttgggtatctcacatcccatctctaaagtggata-- 369  Q
    ||| ||||||||| ||||||||| | |||| ||||||||||||||||||||| ||| ||| |||| || |||||||||||||||||  ||||||||||      
T  48538356 gtctgttatcctacccatactcatttagtaaggatgggaaatcgaatctcatcctgtctcgggttcggatatctcacatcccatcttcaaagtggatatt 48538257  T
Q  370 nnnnnnnnnaataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
             ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48538256 tttttttataataaaaataaaagtattttgcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 48538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 2089724 - 2089605
Alignment:
Q  155 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 251  Q
    |||||||||||||||||| |||| ||||||||||||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  2089724 ctggtgcaaagttataatttgagcaggttcaaaatgaataaaata-agaaatattggtctaaatttaaaactttgaggggatgcagctgcaccagctgac 2089626  T
Q  252 caaaacgtggctccgccactg 272  Q
    ||| |||||||||||||||||    
T  2089625 caatacgtggctccgccactg 2089605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 25155173 - 25155105
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||||||| ||||||| ||||||||||| |||| |||||| ||||| | | |||| ||||||||    
T  25155173 aataaaaataaaagtattttttagtcccgagcacaatgctgtaatgcattacccaacaaagagatgatg 25155105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 14890906 - 14890973
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||||||| ||||||||||| |||||   ||||||||||| ||||||| |||||| ||| ||||    
T  14890906 aataaaaataaaagtatttttcagt-ccgagtgcaatgttgtaatgcattatccagcaaagagacgatg 14890973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 16820943 - 16820824
Alignment:
Q  155 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 251  Q
    |||||||||||||||||| |||||||||||||||||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  16820943 ctggtgcaaagttataatttgaggaggttcaaaatgaataaaata-agaaatattggtctaaatttaaaactttgaggggatgcagctgcaccagctgac 16820845  T
Q  252 caaaacgtggctccgccactg 272  Q
    ||| |||||||||||||||||    
T  16820844 caatacgtggctccgccactg 16820824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 8545696 - 8545627
Alignment:
Q  379 aataaaaataaaaatatttttcagtccc-gagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||||||| |||||||||| ||| |||| |||||||||||| ||||||| | |||| ||||||||    
T  8545696 aataaaaataaaagtatttttcagcccccgagcgtaatgttgtaatgcattatccaacaaagagatgatg 8545627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 39379915 - 39379854
Alignment:
Q  388 aaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgtc 449  Q
    ||||||||||||||| | ||| || ||||||||||| ||||||| | |||| ||||||||||    
T  39379915 aaaaatatttttcagcctcgaacacaatgttgtaatgcattatccaacaaagagatgatgtc 39379854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 9476350 - 9476298
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatc 431  Q
    ||||||||||| | ||||||||||||||||||  | ||||||||| |||||||    
T  9476350 aataaaaataagattatttttcagtcccgagcgcagtgttgtaatgcattatc 9476298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 16678917 - 16678798
Alignment:
Q  155 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 251  Q
    |||||||||||||||||| ||||||||||||| |||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  16678917 ctggtgcaaagttataatttgaggaggttcaagatgaataaaata-agaaatattggtttaaatttaaaactttgaggggatgcagctgcaccagctgac 16678819  T
Q  252 caaaacgtggctccgccactg 272  Q
    ||| |||||||||||||||||    
T  16678818 caatacgtggctccgccactg 16678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 17653153 - 17653034
Alignment:
Q  155 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 251  Q
    |||||||||||||||||| ||||||||||||| |||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  17653153 ctggtgcaaagttataatttgaggaggttcaagatgaataaaata-agaaatattggtttaaatttaaaactttgaggggatgcagctgcaccagctgac 17653055  T
Q  252 caaaacgtggctccgccactg 272  Q
    ||| |||||||||||||||||    
T  17653054 caatacgtggctccgccactg 17653034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 37217752 - 37217819
Alignment:
Q  380 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||| ||||||| |||||  ||||||||    
T  37217752 ataaaaataaaagtattttttagtcccgagcacaatgttgtaatgcattatccagcaaggagatgatg 37217819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 3156835 - 3156903
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    |||||||||| ||  |||| |||| ||||||| |||||||||||||||||||| |||||| ||||||||    
T  3156835 aataaaaatagaagcatttgtcagccccgagcgtaatgttgtaatacattatccagcaaagagatgatg 3156903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 3773817 - 3773880
Alignment:
Q  380 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagat 443  Q
    |||||||||||| |||||| ||| |  ||||| ||||||||||| |||||||||||||| ||||    
T  3773817 ataaaaataaaagtattttgcagccttgagcacaatgttgtaatgcattatctagcaaagagat 3773880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 23475609 - 23475542
Alignment:
Q  380 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    |||||||||||| |||||  |||   ||||||  |||||||||| |||||||||||||||||||||||    
T  23475609 ataaaaataaaagtatttagcagcgtcgagcaatatgttgtaatgcattatctagcaaatagatgatg 23475542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 31345273 - 31345341
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||||||| ||||||||| || |||||  |||| |||||| |||||| || |||| ||||||||    
T  31345273 aataaaaataaaagtatttttcaatctcgagcgcaatgatgtaatgcattatatatcaaagagatgatg 31345341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 20464478 - 20464365
Alignment:
Q  155 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 251  Q
    |||||||||||||||||| |||| ||||||||||||||||||| | |  ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  20464478 ctggtgcaaagttataatttgagcaggttcaaaatgaataaaata-aaaaatattggtttaaatttaaaactttgaggggatgcagctgcaccagctgac 20464380  T
Q  252 caaaacgtggctccg 266  Q
    ||| |||||||||||    
T  20464379 caatacgtggctccg 20464365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 38972664 - 38972732
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||| ||| ||||||||||||||||||  ||| | | ||| |||||||||| ||||||| ||||    
T  38972664 aataaaaattaaagtatttttcagtcccgagcgcaatatagaaatgcattatctaggaaatagacgatg 38972732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 2443238 - 2443119
Alignment:
Q  155 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaactg---agggatgcagctgcaccagctgac 251  Q
    |||||||||||||||||| |||| | ||||||||||||||||| | || |||||| |  ||| || ||||||    ||| ||||||||||||||||||||    
T  2443238 ctggtgcaaagttataatttgagcaagttcaaaatgaataaaata-agaaatattagtctaaatttaaaactttgaaggaatgcagctgcaccagctgac 2443140  T
Q  252 caaaacgtggctccgccactg 272  Q
    ||| |||||||||||||||||    
T  2443139 caatacgtggctccgccactg 2443119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 33616462 - 33616398
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagat 443  Q
    |||||||||| || |||||||||  |||||||| ||||||||||| ||||||| |||||| ||||    
T  33616462 aataaaaatataagtatttttcatccccgagcacaatgttgtaatgcattatcgagcaaaaagat 33616398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 37926314 - 37926373
Alignment:
Q  384 aaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagat 443  Q
    |||||||| ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||    
T  37926314 aaataaaagtattttttagtcctgagcgcaatgttgtaatgcattatctagcaaagagat 37926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 8844133 - 8844075
Alignment:
Q  380 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaa 438  Q
    ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||| ||||||    
T  8844133 ataaatataaaagtattttgcagtcccgagcgcaatgttgtaatgcattatccagcaaa 8844075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 8857097 - 8857039
Alignment:
Q  380 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaa 438  Q
    ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||| ||||||    
T  8857097 ataaatataaaagtattttgcagtcccgagcgcaatgttgtaatgcattatccagcaaa 8857039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 53907020 - 53906966
Alignment:
Q  380 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctag 434  Q
    ||||||||||||||||||||||||| ||| || |||||  |||| ||||||||||    
T  53907020 ataaaaataaaaatatttttcagtctcgatcacaatgtcttaatgcattatctag 53906966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 42907635 - 42907699
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagat 443  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||| ||||||  |||||| ||||    
T  42907635 aataaaaataaaattattttttagatccgagcgtaatgttgtaatgcattattcagcaaagagat 42907699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 46868930 - 46869023
Alignment:
Q  105 tgtgtacatgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaa 199  Q
    ||||||| |||||| |||||||   ||||||| ||||||||||| || | |||||||||||||||| | ||||||||||||||||||||||||||    
T  46868930 tgtgtacctgcttgtaagacttctggtgtgtgcagtgacaagatcacag-ctggtgcaaagttatattttgaggaggttcaaaatgaataaaaaa 46869023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 25484074 - 25484115
Alignment:
Q  155 ctggtgcaaagttataatctgaggaggttcaaaatgaataaa 196  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  25484074 ctggtgcaaagttataatttgaggaggttcaaaatgaataaa 25484115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 25484446 - 25484489
Alignment:
Q  229 gggatgcagctgcaccagctgaccaaaacgtggctccgccactg 272  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  25484446 gggaagcagctgcaccagctgaccaatacgtggctccgccactg 25484489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 2126968 - 2126900
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||||||| ||||||| ||||  ||||  |||||||||| ||||||||||||||| ||||||||    
T  2126968 aataaaaataaaagtattttttagtcgagagcgcaatgttgtaacacattatctagcaaagagatgatg 2126900  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 9402347 - 9402415
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||||||| |||||||||  ||| ||   ||||||||||| |||||||||| ||| ||||||||    
T  9402347 aataaaaataaaagtatttttcatccccaagtgcaatgttgtaatgcattatctagtaaagagatgatg 9402415  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 445
Target Start/End: Complemental strand, 10925755 - 10925723
Alignment:
Q  413 aatgttgtaatacattatctagcaaatagatga 445  Q
    ||||||||||| |||||||||||||||||||||    
T  10925755 aatgttgtaatgcattatctagcaaatagatga 10925723  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 34544658 - 34544592
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatga 445  Q
    ||||||||||||| |||||||||| |||||||  ||||||||||| ||||||| | |||| ||||||    
T  34544658 aataaaaataaaagtatttttcagccccgagcgcaatgttgtaatgcattatccaacaaagagatga 34544592  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 29657082 - 29657014
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||  ||| |||||||||| |||||||  ||||||||||| ||||||| || ||| ||||||||    
T  29657082 aataaaaactaaagtatttttcagccccgagcgcaatgttgtaatgcattatccaggaaagagatgatg 29657014  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 30696667 - 30696731
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagat 443  Q
    ||||||||||||| |||||||||| |  ||||| |||||||||||||| |||  |||||| ||||    
T  30696667 aataaaaataaaagtatttttcagccttgagcaaaatgttgtaatacactattcagcaaagagat 30696731  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 34215002 - 34214934
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||| ||||||| ||||||||||||  || |  ||||||||||| ||||||| |||||| ||||||||    
T  34215002 aataataataaaagtatttttcagtcttgaacgcaatgttgtaatgcattatccagcaaagagatgatg 34214934  T

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Target: scaffold0244 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 4926 - 4858
Alignment:
Q  379 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 447  Q
    ||||||||||||| ||||||||| |  |||||  ||||||||||| ||||||| |||||| ||||||||    
T  4926 aataaaaataaaagtatttttcaatttcgagcgaaatgttgtaatgcattatccagcaaagagatgatg 4858  T

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