View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14089_high_7 (Length: 363)
Name: NF14089_high_7
Description: NF14089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14089_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 2564586 - 2564939
Alignment:
| Q |
1 |
ttattttggttcataattattataactaaaaattgaatgtgtacataacataggtggactacatactaggtaacaatcccatgaagatgtcatacatggt |
100 |
Q |
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| T |
2564586 |
ttattttggttcataattattataactaaaaattgaatgtgtacataacataggtggactacatactaggtaacaatcccatgaagatgtcatacatggt |
2564685 |
T |
|
| Q |
101 |
gggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtgggttgcaatgatggttac |
200 |
Q |
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| T |
2564686 |
gggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtgggttgcaatgatggttac |
2564785 |
T |
|
| Q |
201 |
acagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaatttaatgatgcaagatctg |
300 |
Q |
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| T |
2564786 |
acagattatttctattcctctaatccaaatcctaatattcatgtgggtgctatagttggaggccctgattttaatgaccaatttaatgatgcaagatctg |
2564885 |
T |
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| Q |
301 |
attactctcattctgaacctactacttatataaatgctgctttcacaggttctg |
354 |
Q |
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| T |
2564886 |
attactctcattctgaacctactacttatatgaatgctgctttcataggttctg |
2564939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 2574502 - 2574822
Alignment:
| Q |
25 |
actaaaaattgaatgtgtacata--acataggtggactacatactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatcca |
122 |
Q |
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| T |
2574502 |
actaaaagttgaatgtgtacatattacataggtggactacatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatcca |
2574601 |
T |
|
| Q |
123 |
aagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctcta |
222 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | | ||||||| || |||| |
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| T |
2574602 |
aaacaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtgggttgcaatgatggccaatcgaactatttctcatcatcta |
2574701 |
T |
|
| Q |
223 |
atccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaatttaatgatgcaagatctgattactctcattctgaacctac |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
2574702 |
atccaaatcctaatattcatgtgggtgctattgttggaggaccaaattctaatgaccaatacaatgatgcaagatctgattactctcatgcagaacctac |
2574801 |
T |
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| Q |
323 |
tacttatataaatgctgcttt |
343 |
Q |
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|| ||||| ||||||||||| |
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| T |
2574802 |
cacctatatgaatgctgcttt |
2574822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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