View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14089_low_1 (Length: 380)
Name: NF14089_low_1
Description: NF14089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14089_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 19972825 - 19973158
Alignment:
| Q |
20 |
acagccacaataaacataaacaacatactccccagtaagatatatgttcttcctgatgatttcctatattctccaaacaaaataattccccaaaaagtgc |
119 |
Q |
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| T |
19972825 |
acagccacaataaacataaacaacatactccccagtaagatatatgttcttcctgatgatttcctatattctccaaacaaaataattccccaaaaagtgc |
19972924 |
T |
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| Q |
120 |
tcacaagtggaagtgcctgtttcatcaacacattcaaatgaagaaattattcagtaattcattgaaatctgaacacacttatgttagatatattgagaaa |
219 |
Q |
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| T |
19972925 |
tcacaagtggaagtgcctgtttcatcaacacattcaaatgaagaaattattcagtaattcattgaaatctgaacacacttatgttagatatattgagaaa |
19973024 |
T |
|
| Q |
220 |
attaggtgtcgtttgatgagttctgattagatatcggtgtaaaactaatttacgcagataatgcaatcttgttaaactcacctggacagcatcagctgct |
319 |
Q |
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| T |
19973025 |
attaggtgccgtttgatgagttctgattagatatcggtgtaaaactaatttacgcagataatacaatcttgttcaactcacctggacagcatcagctgct |
19973124 |
T |
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| Q |
320 |
gcatatccagcagcttgacctcccataaactgaa |
353 |
Q |
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| T |
19973125 |
gcatatccagcagcttgacctcccataaactgaa |
19973158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 19984824 - 19984712
Alignment:
| Q |
27 |
caataaacataaacaacatactccccagtaagatatatgttcttcctgatgatttcctatattctccaaacaaaataattccccaaaaagtgctcacaag |
126 |
Q |
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| T |
19984824 |
caatgaacattagcaacatgctcccaagcaatatatatgttctccttgatgattttctatattctccaaacaaaacaacgccccaaaaagtgctcacaag |
19984725 |
T |
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| Q |
127 |
tggaagtgcctgt |
139 |
Q |
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|||||| |||||| |
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| T |
19984724 |
tggaagggcctgt |
19984712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 19623570 - 19623459
Alignment:
| Q |
27 |
caataaacataaacaacatactccccagtaagatatatgttcttcctgatgatttcctatattctccaaacaaaataattccccaaaaagtgctcacaag |
126 |
Q |
| |
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|||| ||||||| |||||| ||||| || || |||||||||| | ||||||||| ||||| || ||||||||||||| ||||| |||||||||||||| |
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| T |
19623570 |
caatgaacataagcaacatgctcccaagcaatgtatatgttctccttgatgattttctatactcaccaaacaaaataacgccccagaaagtgctcacaag |
19623471 |
T |
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| Q |
127 |
tggaagtgcctg |
138 |
Q |
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| T |
19623470 |
tggaagtgcctg |
19623459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 19623311 - 19623251
Alignment:
| Q |
293 |
aaactcacctggacagcatcagctgctgcatatccagcagcttgacctcccataaactgaa |
353 |
Q |
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|||||||| || |||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
19623311 |
aaactcacttgaacagcatctgctgctgcatatcctgcagcttgacctcccataaattgaa |
19623251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 19980337 - 19980277
Alignment:
| Q |
293 |
aaactcacctggacagcatcagctgctgcatatccagcagcttgacctcccataaactgaa |
353 |
Q |
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|||||||| || |||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
19980337 |
aaactcacttgaacagcatctgctgctgcatatcctgcagcttgacctcccataaattgaa |
19980277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 1343122 - 1343159
Alignment:
| Q |
232 |
ttgatgagttctgattagatatcggtgtaaaactaatt |
269 |
Q |
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| T |
1343122 |
ttgatgagttcttattagatatcagtgtaaaactaatt |
1343159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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