View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_10 (Length: 545)
Name: NF1408_high_10
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 30 - 540
Target Start/End: Complemental strand, 8339459 - 8338949
Alignment:
| Q |
30 |
gtgagtgcatgcatgcctgagtgaaactagattagggcatgagaagagggcttgcggtagcttgaagccgggagcatcttcgtcgcaaaagagagtaagc |
129 |
Q |
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| T |
8339459 |
gtgagtgcatgcatgcctgagtgaaactagattagggcatgagaagagggcttgcggtagcttgaagtcgggagcatcttcgtcgcaaaagagagtaagc |
8339360 |
T |
|
| Q |
130 |
tcgagttcatgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaacttatcgtccgagaaggaatgaacacagctgagac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8339359 |
tcgagttcatgaaggtggggtccaatggcagcacgaacccaagtctctacggaatattcacgaaacttatcgtccgtgaaggaatgaacacagctgagac |
8339260 |
T |
|
| Q |
230 |
tcatcttctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaaacgctccgctggttggtcgacatactc |
329 |
Q |
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| T |
8339259 |
tcatcttctgaatggcacggggattacgtaggagagccaggacaccgttaactagaagagcgaaactcttgaaacgctccgctggttggtcgacatactc |
8339160 |
T |
|
| Q |
330 |
atgggagtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaaggcgagcggtggaaactgaggtttttgtagggagg |
429 |
Q |
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| T |
8339159 |
atgggagtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaagtcgagcggtggaaactgaggtttttgtagggagg |
8339060 |
T |
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| Q |
430 |
aatgagaggatatggttcaaaacaccgtccggtaagtagctgattctgtcttcgttttcttcttcacccgttaccagttttcttcgtttggatgatacca |
529 |
Q |
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| T |
8339059 |
aatgaaaggatatggttcaaaacaccgtcgggtaagtagctgattctgtcttcgttttcttcttcacccgttaccagttttcttcgtttggatgatacca |
8338960 |
T |
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| Q |
530 |
cctttgcttct |
540 |
Q |
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| T |
8338959 |
ccattgtttct |
8338949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 17468270 - 17468207
Alignment:
| Q |
133 |
agttcatgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaact |
196 |
Q |
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| T |
17468270 |
agttcttgaagatggggaccaatggcagcacgaacccaattatcaacagaatattcacgaaact |
17468207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 4453849 - 4453781
Alignment:
| Q |
234 |
cttctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaa |
302 |
Q |
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|||| ||||||| ||||||||||| |||||||| || ||| | ||||||| ||||||||| ||| |||| |
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| T |
4453849 |
cttccgaatggcgcggggattacggaggagagcaagcacaccattaactaaaagagcgaagctcctgaa |
4453781 |
T |
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