View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_high_100 (Length: 280)
Name: NF1408_high_100
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_100 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 270
Target Start/End: Original strand, 27643958 - 27644198
Alignment:
| Q |
30 |
ggtgatttcttgggctatgggtaataacttggtatgtgtgtcagctgagttgatggcgtcaaaggtgatgaaaccatcaaggatggaagaaggaaaccag |
129 |
Q |
| |
|
||||| ||||||| ||| ||||| | |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
27643958 |
ggtgacttcttggactagtggtaacagcttgtcatgtgtgtcagctgagttgacagcgtcaaaggtgatgaagccatcaaggatggaagagggaaaccag |
27644057 |
T |
|
| Q |
130 |
ccgtcggcggagcggcgagctgcaccgtaaactttccatgggcctccaagacaatcaggctgctttcaggctttggctaggcttagcccagccattcccg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27644058 |
ccgtcggcggagcggcgagctgcaccgtaaactttccatgggcctccaagacaatcaggctgcttcaaggctttggctaggcttagcccagccattcccg |
27644157 |
T |
|
| Q |
230 |
ttattccaaccactagtgctacgaaatttcgtacattcatc |
270 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27644158 |
ttactccaaccactagtgctacggaatttcgtacattcatc |
27644198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 43 - 252
Target Start/End: Complemental strand, 50254057 - 50253848
Alignment:
| Q |
43 |
gctatgggtaataacttggtatgtgtgtcagctgagttgatggcgtcaaaggtgatgaaaccatcaaggatggaagaaggaaaccagccgtcggcggagc |
142 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||| | ||||| ||||| ||||| | || |||||||||||||| ||||| | |||| ||| |
|
|
| T |
50254057 |
gctataggtaatagcttggcgcgtgtgtcagctgagttaactgcgtcgaaggttatgaagctgtcgaggatggaagaagggaaccattcatcgggggaat |
50253958 |
T |
|
| Q |
143 |
ggcgagctgcaccgtaaactttccatgggcctccaagacaatcaggctgctttcaggctttggctaggcttagcccagccattcccgttattccaaccac |
242 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||| || |
|
|
| T |
50253957 |
ggcgagctgcgccataaactttccatggacctccgagacaatcaggctgcttcaaggctttggctaagcttaggccagccattcccgttactccaactac |
50253858 |
T |
|
| Q |
243 |
tagtgctacg |
252 |
Q |
| |
|
|||||||||| |
|
|
| T |
50253857 |
tagtgctacg |
50253848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 251
Target Start/End: Complemental strand, 50246921 - 50246712
Alignment:
| Q |
42 |
ggctatgggtaataacttggtatgtgtgtcagctgagttgatggcgtcaaaggtgatgaaaccatcaaggatggaagaaggaaaccagccgtcggcggag |
141 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||| | |||||||| |||||||| || || |||||||||||||| ||||| |||| | ||| |
|
|
| T |
50246921 |
ggctataggtaatagtttggcgtgtgtgtcagctgagttaactgcgtcaaatgtgatgaagccgtctaggatggaagaagggaaccattcgtctggggaa |
50246822 |
T |
|
| Q |
142 |
cggcgagctgcaccgtaaactttccatgggcctccaagacaatcaggctgctttcaggctttggctaggcttagcccagccattcccgttattccaacca |
241 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||| |||||| ||| |||||||||| | ||| || | |
|
|
| T |
50246821 |
tggcgagcaccgccgtaaactttccatggacctccgagacaatcaggctgcttcaaggcttcggctaagcttagtccaaccattcccgtaactccgacaa |
50246722 |
T |
|
| Q |
242 |
ctagtgctac |
251 |
Q |
| |
|
|||||||||| |
|
|
| T |
50246721 |
ctagtgctac |
50246712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University