View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_101 (Length: 278)
Name: NF1408_high_101
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_101 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 16563331 - 16563084
Alignment:
| Q |
30 |
tcattttcataagttctctaaacgcagcttattagaataagcgcttaaattaaatgaaataaaagcaaaatcgcgaagattgtgcattgcaattcgaaaa |
129 |
Q |
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| T |
16563331 |
tcattttcataagttctctaaacgcagcttattagaataagcgcttaaattaaatgaaataaaagcaaaatcgcgaagattgtgcattgcaattcgaaaa |
16563232 |
T |
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| Q |
130 |
atatataagcgggtaattaaaatggagagaaagaagagaagagattaacgaaccttctataattcattgatgattagtaaaataaaacgagcgatcttat |
229 |
Q |
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| T |
16563231 |
atatataagcgg-taattaaaatggagagaaagaagagaagagattaacgaaccttctataattcattgatgattagtaaaataaaacgagcgatcttat |
16563133 |
T |
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| Q |
230 |
tgagaataagaaaacaatgtgaaaacgatgagaaggtttcttttgtttt |
278 |
Q |
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| T |
16563132 |
tgagaataagaaaacaatgtgaaaacgatgagaaggtttcttttgtttt |
16563084 |
T |
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