View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_high_104 (Length: 275)

Name: NF1408_high_104
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_high_104
NF1408_high_104
[»] chr1 (2 HSPs)
chr1 (19-265)||(17442309-17442553)
chr1 (103-247)||(21545519-21545660)
[»] chr5 (2 HSPs)
chr5 (141-245)||(21943409-21943513)
chr5 (151-198)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (103-198)||(5882036-5882131)
chr7 (141-190)||(8040290-8040339)
chr7 (210-245)||(24578430-24578465)
chr7 (140-185)||(42575233-42575279)
[»] chr4 (3 HSPs)
chr4 (115-180)||(7504292-7504357)
chr4 (205-249)||(3797331-3797375)
chr4 (205-249)||(4216456-4216500)
[»] chr8 (1 HSPs)
chr8 (37-74)||(11154408-11154445)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 17442309 - 17442553
Alignment:
Q  19 tttgtttctttctaaaatataccatttgatcggattatataatctgaaccatgtttttgttatataataagaattgttttggaattcaacaaactgcttg 118  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  17442309 tttgtttctttctaaaatatactatttgatcggattatataatatgaaccatgtttttgttatataataaaaattgttttagaattcaacaaactgcttg 17442408  T
Q  119 aaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatag 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  17442409 aaataatttcgtgtctttgcatattcaacaattttttattatataaaataatataaaagacattgagcttatgattata--tcactaaatcattatatag 17442506  T
Q  219 ttgttaatgatatacatttctactaatccactcaaggcctatgctac 265  Q
    |||||||||||||||||||||||||| || || ||||||| ||||||    
T  17442507 ttgttaatgatatacatttctactaacccgcttaaggcctgtgctac 17442553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 21545660 - 21545519
Alignment:
Q  103 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctca 202  Q
    |||||||||||||||| | ||||||| ||||| ||   ||||||||| |||||||| |||||| ||||||||||||||  |||||||| ||||||||  |    
T  21545660 ttcaacaaactgcttgcactaatttcatgtctctgtggattcaacaaattttcattgtataaa-taatataaaagacaacgagcttataattatatcaaa 21545562  T
Q  203 ctaaatcattatatagttgttaatgatatacatttctactaatcc 247  Q
     ||  ||||||| ||||||||||||||||||||||| ||||||||    
T  21545561 ata--tcattatgtagttgttaatgatatacatttcaactaatcc 21545519  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 21943513 - 21943409
Alignment:
Q  141 attcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgttaatgatatacatttcta 240  Q
    ||||||||| |||| |||||||||||||||||||||||||  ||| |||| |||||||   |  ||||||| ||||| |||||||| ||||||||||| |    
T  21943513 attcaacaaatttttattatataaaataatataaaagacaacgagtttataattatattaaaaaaaatcataatatatttgttaataatatacatttcaa 21943414  T
Q  241 ctaat 245  Q
    |||||    
T  21943413 ctaat 21943409  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 20117168 - 20117121
Alignment:
Q  151 ttttcattatataaaataatataaaagacattgagcttatgattatat 198  Q
    |||||| ||||||||||||||||||||| |||||| |||| |||||||    
T  20117168 ttttcaatatataaaataatataaaagagattgaggttataattatat 20117121  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 5882036 - 5882131
Alignment:
Q  103 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatat 198  Q
    ||||||| |||||||| | | ||||| | ||||||   ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||| |||||||    
T  5882036 ttcaacatactgcttgcactgatttcatatctttgtggattcaacaaattttcattatacaaaataatacaaaagacaatgagcatataattatat 5882131  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 8040339 - 8040290
Alignment:
Q  141 attcaacaatttttcattatataaaataatataaaagacattgagcttat 190  Q
    |||||||||||||| | ||| ||||||||||||||||||| |||||||||    
T  8040339 attcaacaatttttaaatatgtaaaataatataaaagacaatgagcttat 8040290  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 245
Target Start/End: Original strand, 24578430 - 24578465
Alignment:
Q  210 attatatagttgttaatgatatacatttctactaat 245  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24578430 attatatagttgttaatgatatacatttcaactaat 24578465  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 42575279 - 42575233
Alignment:
Q  140 tattcaacaatttttcatta-tataaaataatataaaagacattgag 185  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||    
T  42575279 tattcaacaatttttcaataatataaaataatataaaagacaatgag 42575233  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 7504292 - 7504357
Alignment:
Q  115 cttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagaca 180  Q
    |||||||| ||||| ||||||||   ||| ||||| |||||||||||||||||| |||||||||||    
T  7504292 cttgaaatgatttcatgtctttgtggatttaacaaattttcattatataaaatagtataaaagaca 7504357  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 3797375 - 3797331
Alignment:
Q  205 aaatcattatatagttgttaatgatatacatttctactaatccac 249  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  3797375 aaatcattatgtagttgttaacaatatacatttcaactaatccac 3797331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 4216500 - 4216456
Alignment:
Q  205 aaatcattatatagttgttaatgatatacatttctactaatccac 249  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  4216500 aaatcattatgtagttgttaacaatatacatttcaactaatccac 4216456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 11154445 - 11154408
Alignment:
Q  37 ataccatttgatcggattatataatctgaaccatgttt 74  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  11154445 ataccatttgctcggattatagaatctgaaccatgttt 11154408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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