View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_high_116 (Length: 261)

Name: NF1408_high_116
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_high_116
NF1408_high_116
[»] chr5 (4 HSPs)
chr5 (30-154)||(37036241-37036365)
chr5 (46-147)||(4940821-4940922)
chr5 (73-123)||(5344640-5344690)
chr5 (86-154)||(35360936-35361004)
[»] scaffold0137 (1 HSPs)
scaffold0137 (73-150)||(21581-21658)
[»] chr7 (9 HSPs)
chr7 (73-154)||(44481493-44481574)
chr7 (58-148)||(27262464-27262554)
chr7 (74-152)||(35303536-35303614)
chr7 (73-145)||(28554373-28554445)
chr7 (58-148)||(27269329-27269419)
chr7 (75-120)||(22569125-22569170)
chr7 (58-152)||(28554568-28554662)
chr7 (95-144)||(27247085-27247134)
chr7 (98-154)||(45712044-45712100)
[»] chr4 (8 HSPs)
chr4 (73-154)||(4064608-4064689)
chr4 (73-152)||(32116709-32116790)
chr4 (48-152)||(36491582-36491686)
chr4 (73-120)||(13635264-13635311)
chr4 (74-154)||(31279782-31279862)
chr4 (70-152)||(37342351-37342432)
chr4 (73-150)||(10117073-10117150)
chr4 (100-152)||(41543006-41543058)
[»] chr3 (11 HSPs)
chr3 (83-148)||(48971868-48971933)
chr3 (73-152)||(3918271-3918350)
chr3 (46-152)||(26004566-26004675)
chr3 (73-149)||(38309816-38309892)
chr3 (86-152)||(35107790-35107855)
chr3 (74-153)||(265600-265679)
chr3 (86-152)||(35311024-35311090)
chr3 (74-152)||(37671499-37671577)
chr3 (68-153)||(29063652-29063736)
chr3 (47-120)||(30821561-30821634)
chr3 (73-121)||(34396625-34396673)
[»] chr1 (18 HSPs)
chr1 (83-152)||(30748462-30748531)
chr1 (83-152)||(30769913-30769982)
chr1 (83-152)||(45487955-45488024)
chr1 (88-150)||(48583623-48583685)
chr1 (97-147)||(52595167-52595217)
chr1 (73-154)||(3592430-3592511)
chr1 (82-134)||(27494807-27494859)
chr1 (73-148)||(7193620-7193695)
chr1 (98-152)||(11354879-11354934)
chr1 (83-150)||(25781733-25781799)
chr1 (102-152)||(25781568-25781618)
chr1 (86-152)||(32053693-32053759)
chr1 (99-153)||(46202691-46202745)
chr1 (91-152)||(26610569-26610630)
chr1 (73-113)||(14905591-14905631)
chr1 (74-142)||(27495367-27495435)
chr1 (73-121)||(28620270-28620318)
chr1 (49-109)||(34151525-34151585)
[»] chr8 (7 HSPs)
chr8 (58-152)||(19723562-19723654)
chr8 (76-120)||(22447418-22447462)
chr8 (73-120)||(8878454-8878501)
chr8 (73-148)||(13288136-13288211)
chr8 (83-153)||(32721874-32721944)
chr8 (83-152)||(8878646-8878715)
chr8 (74-147)||(13246972-13247045)
[»] chr6 (5 HSPs)
chr6 (86-152)||(8381946-8382011)
chr6 (86-153)||(32722836-32722903)
chr6 (70-115)||(6712512-6712557)
chr6 (73-153)||(27978374-27978455)
chr6 (46-153)||(32820029-32820134)
[»] chr2 (3 HSPs)
chr2 (47-141)||(1468665-1468759)
chr2 (89-152)||(32889820-32889884)
chr2 (98-152)||(23214467-23214521)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 37036365 - 37036241
Alignment:
Q  30 ttttattctctgaaacgtttttcattatcacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatg 129  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||     
T  37036365 ttttattctctcaaatgtttttcattatcacttttgcttcctgcttttaaattaactcatgtgttgccttcatatttttgaaagaaattttttaagaata 37036266  T
Q  130 attaaaatattataagaatctcttt 154  Q
     ||||||||||||||||||||||||    
T  37036265 tttaaaatattataagaatctcttt 37036241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 4940821 - 4940922
Alignment:
Q  46 gtttttcattatcacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataag 145  Q
    ||||||||| |||||||||  |||||  |||||||| |||||| |||||||||||||||||| |||| |  |||||||| |||| ||| |||||||||||    
T  4940821 gtttttcatgatcacttttggttcctatttttaaatcaactcaagtgtagccttcatattttagaataattttttttaaaaatgtttagaatattataag 4940920  T
Q  146 aa 147  Q
    ||    
T  4940921 aa 4940922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 5344640 - 5344690
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaatttttta 123  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||||    
T  5344640 cttttaagtcaactcaagtgtaaccttcatatttttgaatgaaatttttta 5344690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 35361004 - 35360936
Alignment:
Q  86 tcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctcttt 154  Q
    ||||||||| |||||| ||||||||||||| ||||  | ||||| ||| |||||||||| ||| |||||    
T  35361004 tcatgtgtacccttcaaatttttgaatgaatttttacatgaatgtttagaatattataaaaatatcttt 35360936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 21581 - 21658
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatct 150  Q
    ||||||| | ||| ||||||||| |||||||||||| |||||||||||  ||||||| ||| ||||||||||||||||    
T  21581 cttttaagtcaacgcatgtgtagacttcatattttttaatgaaattttacaagaatgtttagaatattataagaatct 21658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 44481493 - 44481574
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctcttt 154  Q
    ||||||| | |||| || ||||||||||||||||||||||||||||||||| ||||| | | ||||||||||| ||| ||||    
T  44481493 cttttaagtcaacttatatgtagccttcatatttttgaatgaaattttttaggaatgttaagaatattataagtatcacttt 44481574  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 27262554 - 27262464
Alignment:
Q  58 cacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaat 148  Q
    |||||||| | |||||| |||| | ||||||| | ||| |||||||||||||||||||||||||| | || | ||| ||||||||||||||    
T  27262554 cacttttagtccctgctattaagtcaactcatatctagtcttcatatttttgaatgaaattttttcaaaaggtttagaatattataagaat 27262464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 35303536 - 35303614
Alignment:
Q  74 ttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    |||||| | |||| |||||||| |||||||||||||||||||||||   || |||| ||| ||||||||||||||||||    
T  35303536 ttttaagtcaacttatgtgtagacttcatatttttgaatgaaatttagcaataatgtttagaatattataagaatctct 35303614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 28554373 - 28554445
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataag 145  Q
    ||||||||| |||| |||||||  |||||||||||||||||||||||||||  |||| ||| || ||||||||    
T  28554373 cttttaaatcaacttatgtgtactcttcatatttttgaatgaaattttttagaaatgtttataacattataag 28554445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 27269419 - 27269329
Alignment:
Q  58 cacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaat 148  Q
    |||||||| | ||| || |||| | ||||||| | ||| |||||||||||||||||||||||||| | || | ||| ||||||||||||||    
T  27269419 cacttttagtccctactattaagtcaactcatatctagtcttcatatttttgaatgaaattttttcaaaaggtttagaatattataagaat 27269329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 22569125 - 22569170
Alignment:
Q  75 tttaaattaactcatgtgtagccttcatatttttgaatgaaatttt 120  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||    
T  22569125 tttaaatcaactcatgtgtatacttcatatttttgaatgaaatttt 22569170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 28554662 - 28554568
Alignment:
Q  58 cacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||| || ||| ||| ||||| ||||| |||||| |||||| |||||| |||||| ||||| | |||||  || || |||||||||||||||    
T  28554662 cacttttgctccctacttctaaatcaactcttgtgtatccttcacattttttaatgaattttttcaggaatgtctataacattataagaatctct 28554568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 27247134 - 27247085
Alignment:
Q  95 gccttcatatttttgaatgaaattttttaagaatgattaaaatattataa 144  Q
    |||||||||||||||||||||||||||||  || | ||| ||||||||||    
T  27247134 gccttcatatttttgaatgaaattttttagaaaggtttagaatattataa 27247085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 45712044 - 45712100
Alignment:
Q  98 ttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctcttt 154  Q
    ||||||||||| ||| ||||||| |||  ||| |||||||||||||||||| |||||    
T  45712044 ttcatatttttaaattaaattttataattatgtttaaaatattataagaatttcttt 45712100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 4064608 - 4064689
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctcttt 154  Q
    ||||||||| ||||||| ||||| |||||||||||| |||||||||||  |  |||| ||| ||||||||||||||||||||    
T  4064608 cttttaaatcaactcatttgtagtcttcatattttttaatgaaattttgcagaaatgtttagaatattataagaatctcttt 4064689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 32116790 - 32116709
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatga--aattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||| | ||| |||||||||| |||||||||||||||||  |||||||||  |||| ||| ||||||||||||||||||    
T  32116790 cttttaactcaacccatgtgtagctttcatatttttgaatgatcaattttttagaaatgtttagaatattataagaatctct 32116709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 36491582 - 36491686
Alignment:
Q  48 ttttcattatcacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaa 147  Q
    ||||||| | |||||||| | ||| || |||| | |||||||||||||  ||||||||||| |||||||||||  |  |||||||| |||||||||| ||    
T  36491582 ttttcatcaccacttttagtccctcctattaagtcaactcatgtgtagatttcatattttttaatgaaattttgcataaatgattagaatattataaaaa 36491681  T
Q  148 tctct 152  Q
    |||||    
T  36491682 tctct 36491686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 13635311 - 13635264
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaatttt 120  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  13635311 cttttaaatcaacccatgtgtagtcttcatatttttgaatgaaatttt 13635264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 31279862 - 31279782
Alignment:
Q  74 ttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctcttt 154  Q
    |||||| | |||| || ||||| |||| |||||||||||| || |||| ||||||| ||| |||||||||| |||||||||    
T  31279862 ttttaagtcaacttatatgtagtcttcgtatttttgaatgtaaattttgaagaatgtttagaatattataataatctcttt 31279782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 37342351 - 37342432
Alignment:
Q  70 ctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    |||||||||||| |||||||||||| | |||| | |||| |||||  ||||  ||||||| ||| ||||||||||||||||||    
T  37342351 ctgcttttaaatcaactcatgtgtatcattcagaattttaaatgag-ttttacaagaatgtttagaatattataagaatctct 37342432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 10117150 - 10117073
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatct 150  Q
    ||||||| |||| |||||| ||  |||||||||||| ||| |||||||| |  |||| ||| ||||||||||||||||    
T  10117150 cttttaagttaattcatgtctaaacttcatattttttaatcaaatttttcagaaatgtttagaatattataagaatct 10117073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 41543006 - 41543058
Alignment:
Q  100 catatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    |||| |||||||||||||||| ||| |||  | ||||||||||||||||||||    
T  41543006 catagttttgaatgaaattttgtaaaaatattaaaaatattataagaatctct 41543058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 48971933 - 48971868
Alignment:
Q  83 aactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaat 148  Q
    ||||||||| || |||||||||||||||||||  |||||||| |||| ||||||||||||||||||    
T  48971933 aactcatgtataaccttcatatttttgaatgagtttttttaaaaatgtttaaaatattataagaat 48971868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 3918271 - 3918350
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||| | ||| ||||||||| |||||||||||| ||||||| |||  ||||||| ||| ||||||||||||||||||    
T  3918271 cttttaagtcaacgcatgtgtagacttcatattttttaatgaaaatttacaagaatgtttagaatattataagaatctct 3918350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 26004566 - 26004675
Alignment:
Q  46 gtttttcattatcacttttacttcctgcttttaaattaactcatgt----gtagccttcatatttttgaatgaaattttttaagaatgattaaaatatta 141  Q
    |||||| || |||||||||  | ||| | ||||||| |||||||||    ||||||||||||||||||||| || ||||||||||||| ||| |||||||    
T  26004566 gtttttaatcatcactttttgtccctacatttaaatcaactcatgtatacgtagccttcatatttttgaat-aatttttttaagaatgtttagaatatta 26004664  T
Q  142 taagaatctct 152  Q
    |||||| ||||    
T  26004665 taagaacctct 26004675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 38309816 - 38309892
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatc 149  Q
    ||||||| | ||||| ||||||||| |||||||||| |||||||||||| |  |||| ||| |||||||||||||||    
T  38309816 cttttaagtcaactcttgtgtagccatcatattttttaatgaaatttttcagaaatgtttagaatattataagaatc 38309892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 35107855 - 35107790
Alignment:
Q  86 tcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||||| |||||| |||||| |||||  |||| || ||||||||||||||||||||||||||||    
T  35107855 tcatgtgtacccttca-attttttaatgagtttttgtaggaatgattaaaatattataagaatctct 35107790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 265679 - 265600
Alignment:
Q  74 ttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctctt 153  Q
    |||||||| |||||||||||| | |||||||||||||||||| ||||  | | ||| ||| |||||||||| | ||||||    
T  265679 ttttaaatcaactcatgtgtaccattcatatttttgaatgaatttttacatggatgtttagaatattataacattctctt 265600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 35311024 - 35311090
Alignment:
Q  86 tcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    |||||||||  |||||||||||||||| |||||||  |  |||| |||||||||||||| |||||||    
T  35311024 tcatgtgtattcttcatatttttgaataaaattttgcagaaatgtttaaaatattataaaaatctct 35311090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 37671499 - 37671577
Alignment:
Q  74 ttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    |||||| | |||||||||| || || |||||||||||||||||||||  | |||||  ||  |||||||||||||||||    
T  37671499 ttttaagtcaactcatgtgcagactgcatatttttgaatgaaattttgcaggaatgtatagtatattataagaatctct 37671577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 29063652 - 29063736
Alignment:
Q  68 tcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctctt 153  Q
    |||| ||||||| | |||| || ||||||| |||||||||| ||||||| |||| | ||||  |||||||||||||||||| ||||    
T  29063652 tcctacttttaagtcaacttatatgtagccctcatattttt-aatgaaaattttcaggaatatttaaaatattataagaatttctt 29063736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 30821634 - 30821561
Alignment:
Q  47 tttttcattatcacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaatttt 120  Q
    |||| |||| ||||||||  | ||| |||| |||| ||||||| |||||  |||||||||||||||||||||||    
T  30821634 ttttccattttcacttttggtccctcctttaaaataaactcatatgtagaattcatatttttgaatgaaatttt 30821561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 34396625 - 34396673
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttt 121  Q
    ||||| ||| || ||||||||| ||||||||||||| ||||||||||||    
T  34396625 ctttttaatcaattcatgtgtaaccttcatattttttaatgaaattttt 34396673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 30748462 - 30748531
Alignment:
Q  83 aactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||| |||| ||||||||||||| |||||||| |||||  |||||||| ||||||||||||||||||    
T  30748462 aactcatatgtaaccttcatattttttaatgaaatattttagaaatgattagaatattataagaatctct 30748531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 30769913 - 30769982
Alignment:
Q  83 aactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||| |||| ||||||||||||| |||||||| |||||  |||||||| ||||||||||||||||||    
T  30769913 aactcatatgtaaccttcatattttttaatgaaatattttagaaatgattagaatattataagaatctct 30769982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 45487955 - 45488024
Alignment:
Q  83 aactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||||| ||||||| |||||||||||||||| ||||||| | || ||| ||||||||||||||||||    
T  45487955 aactcatgtctagccttaatatttttgaatgaaaatttttaatattgtttagaatattataagaatctct 45488024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 48583623 - 48583685
Alignment:
Q  88 atgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatct 150  Q
    ||||||| |||||| ||||||||||||| ||||| | ||| | ||||||||||||||||||||    
T  48583623 atgtgtacccttcaaatttttgaatgaactttttcatgaaagtttaaaatattataagaatct 48583685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 52595167 - 52595217
Alignment:
Q  97 cttcatatttttgaatgaaattttttaagaatgattaaaatattataagaa 147  Q
    |||| ||||||||||||||||||||| | |||| |||||||||||||||||    
T  52595167 cttcgtatttttgaatgaaatttttttaaaatgtttaaaatattataagaa 52595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 3592511 - 3592430
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctcttt 154  Q
    ||||||| | || |||||||| | ||||||||||||||||||| ||||||  || || ||| |||||||||| |||||||||    
T  3592511 cttttaattcaattcatgtgttgtcttcatatttttgaatgaatttttttcggactgtttagaatattataataatctcttt 3592430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 27494807 - 27494859
Alignment:
Q  82 taactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaa 134  Q
    |||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  27494807 taacacatgtgtagccttcatatttttgaatgaacatttttaggaatgtttaa 27494859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 7193620 - 7193695
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaat 148  Q
    |||||||||||| ||||||||  |||| | ||||||||||||  ||||  | ||||| ||||||||||||||||||    
T  7193620 cttttaaattaaatcatgtgtgtcctttaaatttttgaatgagcttttacatgaatgtttaaaatattataagaat 7193695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 11354934 - 11354879
Alignment:
Q  98 ttcatatttttgaatgaaat-tttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||||||||||| |||| |||||||||||  ||||| ||||||||||||||||    
T  11354934 ttcatatttttgaatcaaatctttttaagaatatttaaattattataagaatctct 11354879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 25781799 - 25781733
Alignment:
Q  83 aactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatct 150  Q
    ||||| |||||||||||||||||||| ||| |||||| | ||||||| | | ||||||||||||||||    
T  25781799 aactcttgtgtagccttcatatttttaaat-aaatttatcaagaatgttaagaatattataagaatct 25781733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 25781568 - 25781618
Alignment:
Q  102 tatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||||||||||| ||||  | |||| ||||||||||||||||||||||    
T  25781568 tatttttgaatgaaaattttcgaaaatgtttaaaatattataagaatctct 25781618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 32053759 - 32053693
Alignment:
Q  86 tcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    |||||||||| |||||||||||||||| ||| |||  | ||||| ||| |||||| |||||||||||    
T  32053759 tcatgtgtagtcttcatatttttgaataaaaatttccatgaatgtttagaatattttaagaatctct 32053693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 46202691 - 46202745
Alignment:
Q  99 tcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctctt 153  Q
    ||||||||||||||||  |||| || ||||  |||||||||||||||||||||||    
T  46202691 tcatatttttgaatgagtttttatatgaatatttaaaatattataagaatctctt 46202745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 26610569 - 26610630
Alignment:
Q  91 tgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||||| |||||||||||||||| |||| || |||  ||| ||||||| ||||||||||    
T  26610569 tgtagccttaatatttttgaatgaaaattttcaaaaatttttagaatattaaaagaatctct 26610630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 14905591 - 14905631
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatg 113  Q
    ||||||| | ||||||| |||||||||||||||||||||||    
T  14905591 cttttaagtcaactcatatgtagccttcatatttttgaatg 14905631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 27495435 - 27495367
Alignment:
Q  74 ttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattat 142  Q
    |||||| ||||||| |||||| | ||||||||||||||||||| |||  | ||||| ||| ||||||||    
T  27495435 ttttaagttaactcttgtgtacctttcatatttttgaatgaaaatttccatgaatgtttataatattat 27495367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 28620318 - 28620270
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttt 121  Q
    ||||||||| |||||||||||| || |||||||||| ||||||| ||||    
T  28620318 cttttaaataaactcatgtgtaaccctcatattttttaatgaaaatttt 28620270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 34151585 - 34151525
Alignment:
Q  49 tttcattatcacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttg 109  Q
    ||||||| ||||||||  |||||||||| |||| |||||||||||||  |||||| |||||    
T  34151585 tttcattttcacttttggttcctgctttaaaataaactcatgtgtagaattcatacttttg 34151525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 19723654 - 19723562
Alignment:
Q  58 cacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    |||||||| ||| | ||||||| | |||||| ||||| |||||||||||| |||| ||||||||  |||||| |||||||||||||| |||||||    
T  19723654 cacttttagttcatacttttaagtcaactcacgtgtaaccttcatatttt-gaat-aaatttttatagaatgtttaaaatattataacaatctct 19723562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 22447418 - 22447462
Alignment:
Q  76 ttaaattaactcatgtgtagccttcatatttttgaatgaaatttt 120  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||    
T  22447418 ttaagttaactcatgtgtacccttcatatttttgaatgaattttt 22447462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 8878454 - 8878501
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaatttt 120  Q
    ||||||||  |||||||||||| || ||||||||||||||||||||||    
T  8878454 cttttaaaccaactcatgtgtaaccatcatatttttgaatgaaatttt 8878501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 13288211 - 13288136
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaat 148  Q
    ||||||| |||||| || ||| | |||||| ||||||||||||| |||| || |||| |||||||||||| |||||    
T  13288211 cttttaagttaacttatatgtggtcttcatgtttttgaatgaaaattttcaaaaatgtttaaaatattattagaat 13288136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 32721874 - 32721944
Alignment:
Q  83 aactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctctt 153  Q
    ||||||| |||||  ||||||||||| ||| ||||||| ||| ||  |||| |||||||||||||||||||    
T  32721874 aactcatatgtagaattcatatttttcaataaaattttgtaaaaaaaattataatattataagaatctctt 32721944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 8878715 - 8878646
Alignment:
Q  83 aactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||| |||||| ||||| ||||||  |||||  ||||||||||||| ||| |||||||| |||||||||    
T  8878715 aactcgtgtgtaaccttcgtattttaaaatgattttttttaagaatgtttagaatattattagaatctct 8878646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 13247045 - 13246972
Alignment:
Q  74 ttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaa 147  Q
    ||||||||||||||||||||| | |||| | ||||||||||| ||||  || |||| ||| |||||||| ||||    
T  13247045 ttttaaattaactcatgtgtatcattcaaaattttgaatgaatttttacaacaatgtttagaatattattagaa 13246972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 8381946 - 8382011
Alignment:
Q  86 tcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||||| |||||||||||||||||| | ||||| ||| ||| ||| ||||||||||||||||||    
T  8381946 tcatgtgtacccttcatatttttgaatg-agtttttcaagtatgtttagaatattataagaatctct 8382011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 32722903 - 32722836
Alignment:
Q  86 tcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctctt 153  Q
    ||||||||||||||||| ||||||||||||| |||  || |||  |||||||||||| ||| ||||||    
T  32722903 tcatgtgtagccttcatctttttgaatgaaaatttccaaaaatatttaaaatattatgagactctctt 32722836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 6712512 - 6712557
Alignment:
Q  70 ctgcttttaaattaactcatgtgtagccttcatatttttgaatgaa 115  Q
    ||||||||||||||| |||||||||  ||||| |||||||||||||    
T  6712512 ctgcttttaaattaaatcatgtgtatacttcagatttttgaatgaa 6712557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 27978374 - 27978455
Alignment:
Q  73 cttttaaattaactcatgtgtagccttcatat-ttttgaatgaaattttttaagaatgattaaaatattataagaatctctt 153  Q
    ||||||||| || |||||||||||||||||||  ||| || |||||||   | ||||| ||| |||||||||||||||||||    
T  27978374 cttttaaatcaattcatgtgtagccttcatatcattttaaggaaatttcacaggaatgtttagaatattataagaatctctt 27978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 32820029 - 32820134
Alignment:
Q  46 gtttttcattatcacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatattataag 145  Q
    |||||||||  ||||||||||| ||| ||||||||| ||||||  |||||  || |||||||||||| |||||||  || || | | | ||| |||||||    
T  32820029 gtttttcatcttcacttttactccctccttttaaataaactca--tgtagaatttatatttttgaataaaattttacaaaaaagttaataatcttataag 32820126  T
Q  146 aatctctt 153  Q
    ||||||||    
T  32820127 aatctctt 32820134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 1468759 - 1468665
Alignment:
Q  47 tttttcattatcacttttacttcctgcttttaaattaactcatgtgtagccttcatatttttgaatgaaattttttaagaatgattaaaatatta 141  Q
    |||||||| | |||||||||| | | ||||||| |||||||  |||||  |||||||||||||||||||||||   ||||||| ||| |||||||    
T  1468759 tttttcatcaccacttttactccatacttttaagttaactctcgtgtattcttcatatttttgaatgaaatttgccaagaatgtttagaatatta 1468665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 32889884 - 32889820
Alignment:
Q  89 tgtgtagccttcatatttttgaatgaaattttttaagaa-tgattaaaatattataagaatctct 152  Q
    |||||| || ||||||||||||||||  |||||| |||| || ||||||||||||||||||||||    
T  32889884 tgtgtaaccatcatatttttgaatgatttttttttagaaatgtttaaaatattataagaatctct 32889820  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 23214467 - 23214521
Alignment:
Q  98 ttcatatttttgaatgaaattttttaagaatgattaaaatattataagaatctct 152  Q
    ||||||||||||||| |||||||  || || | ||||||||||||||||||||||    
T  23214467 ttcatatttttgaataaaattttgcaaaaaagtttaaaatattataagaatctct 23214521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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