View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_high_121 (Length: 257)

Name: NF1408_high_121
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_high_121
NF1408_high_121
[»] chr2 (1 HSPs)
chr2 (25-114)||(22085832-22085921)
[»] chr4 (2 HSPs)
chr4 (129-218)||(22308754-22308843)
chr4 (129-209)||(22308034-22308114)
[»] chr8 (1 HSPs)
chr8 (129-219)||(39885692-39885782)
[»] chr7 (4 HSPs)
chr7 (129-209)||(37349097-37349177)
chr7 (129-224)||(13419902-13419997)
chr7 (129-224)||(37349817-37349912)
chr7 (129-166)||(21017373-21017410)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 22085921 - 22085832
Alignment:
Q  25 aagcactgaactcaagcaaaacgataaagttatatcatcactaacaaaaacttactgtatgcgccaagttgattaacaacaacaacaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||| || ||||||||    
T  22085921 aagcactgaactcaagcaaaacgataaagttatatcatcactatcaaaaacttactgtctgcaccaagtagattaacagcaccaacaaat 22085832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 22308754 - 22308843
Alignment:
Q  129 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggttt 218  Q
    ||||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||  |||||||    
T  22308754 ttttagttaagttaaagggggttttcaaagaaatttttgttgaatttctagtgtagtgatgttgatgtttgttgataaatttatgggttt 22308843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 22308114 - 22308034
Alignment:
Q  129 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaatt 209  Q
    |||||||||| |||||  ||||||||||| || ||||||||| ||||| |||| ||||||| ||| ||||||| |||||||    
T  22308114 ttttagttaacctaaaaagggttttcaaataaatttttgatggatttccagtgcagtgatgttgacgtttgttaatgaatt 22308034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 39885692 - 39885782
Alignment:
Q  129 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggtttt 219  Q
    ||||||||||| |||| ||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||  ||||||||    
T  39885692 ttttagttaagttaaaggggtttttcaaagaaatttttgttgaatttctagtgtagtgatgttgatgtttgttgataaatttatgggtttt 39885782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 37349177 - 37349097
Alignment:
Q  129 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaatt 209  Q
    ||||||||||| |||| |||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  37349177 ttttagttaagttaaagggggttttcagagaaatttttgttgaatttctagtgtagtgatgttgatgtttgttgataaatt 37349097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 13419902 - 13419997
Alignment:
Q  129 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggttttatatg 224  Q
    |||||||||||||||| |||||||||||| || ||||| ||| ||||| |||| ||||||| ||| ||||||| |||||||  |||||||| ||||    
T  13419902 ttttagttaagctaaaaggggttttcaaataaatttttaatggatttccagtgcagtgatgttgacgtttgttaatgaatttatgggttttctatg 13419997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 37349817 - 37349912
Alignment:
Q  129 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggttttatatg 224  Q
    |||||||||||||||| |||||||||||| || ||||||||| ||||| |||| ||||||| ||| |||| || |||||||  |||||||| ||||    
T  37349817 ttttagttaagctaaaaggggttttcaaataaatttttgatggatttccagtgcagtgatgttgacgtttattaatgaatttatgggttttctatg 37349912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 21017373 - 21017410
Alignment:
Q  129 ttttagttaagctaaatggggttttcaaagaatttttt 166  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21017373 ttttagttaagctaaatgggggtttcaaagaatttttt 21017410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University