View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_high_123 (Length: 255)

Name: NF1408_high_123
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_high_123
NF1408_high_123
[»] chr2 (1 HSPs)
chr2 (23-112)||(22085832-22085921)
[»] chr4 (2 HSPs)
chr4 (127-216)||(22308754-22308843)
chr4 (127-207)||(22308034-22308114)
[»] chr8 (1 HSPs)
chr8 (127-217)||(39885692-39885782)
[»] chr7 (4 HSPs)
chr7 (127-207)||(37349097-37349177)
chr7 (127-222)||(13419902-13419997)
chr7 (127-222)||(37349817-37349912)
chr7 (127-164)||(21017373-21017410)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 22085921 - 22085832
Alignment:
Q  23 aagcactgaactcaagcaaaacgataaagttatatcatcactaacaaaaacttactgtatgcgccaagttgattaacaacaacaacaaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||| || ||||||||    
T  22085921 aagcactgaactcaagcaaaacgataaagttatatcatcactatcaaaaacttactgtctgcaccaagtagattaacagcaccaacaaat 22085832  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 22308754 - 22308843
Alignment:
Q  127 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggttt 216  Q
    ||||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||  |||||||    
T  22308754 ttttagttaagttaaagggggttttcaaagaaatttttgttgaatttctagtgtagtgatgttgatgtttgttgataaatttatgggttt 22308843  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 22308114 - 22308034
Alignment:
Q  127 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaatt 207  Q
    |||||||||| |||||  ||||||||||| || ||||||||| ||||| |||| ||||||| ||| ||||||| |||||||    
T  22308114 ttttagttaacctaaaaagggttttcaaataaatttttgatggatttccagtgcagtgatgttgacgtttgttaatgaatt 22308034  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 39885692 - 39885782
Alignment:
Q  127 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggtttt 217  Q
    ||||||||||| |||| ||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||  ||||||||    
T  39885692 ttttagttaagttaaaggggtttttcaaagaaatttttgttgaatttctagtgtagtgatgttgatgtttgttgataaatttatgggtttt 39885782  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 37349177 - 37349097
Alignment:
Q  127 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaatt 207  Q
    ||||||||||| |||| |||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  37349177 ttttagttaagttaaagggggttttcagagaaatttttgttgaatttctagtgtagtgatgttgatgtttgttgataaatt 37349097  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 13419902 - 13419997
Alignment:
Q  127 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggttttatatg 222  Q
    |||||||||||||||| |||||||||||| || ||||| ||| ||||| |||| ||||||| ||| ||||||| |||||||  |||||||| ||||    
T  13419902 ttttagttaagctaaaaggggttttcaaataaatttttaatggatttccagtgcagtgatgttgacgtttgttaatgaatttatgggttttctatg 13419997  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 37349817 - 37349912
Alignment:
Q  127 ttttagttaagctaaatggggttttcaaagaattttttgatgaatttctagtgtagtgatgatgatgtttgttgatgaattcctgggttttatatg 222  Q
    |||||||||||||||| |||||||||||| || ||||||||| ||||| |||| ||||||| ||| |||| || |||||||  |||||||| ||||    
T  37349817 ttttagttaagctaaaaggggttttcaaataaatttttgatggatttccagtgcagtgatgttgacgtttattaatgaatttatgggttttctatg 37349912  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 21017373 - 21017410
Alignment:
Q  127 ttttagttaagctaaatggggttttcaaagaatttttt 164  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21017373 ttttagttaagctaaatgggggtttcaaagaatttttt 21017410  T

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