View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_high_124 (Length: 254)
Name: NF1408_high_124
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_124 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 10676721 - 10676949
Alignment:
| Q |
14 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagaccaaagaaatcaatgagagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10676721 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgctgtgatctggtagcaacatcaagaccaaagaaatcaatgagagg |
10676820 |
T |
|
| Q |
114 |
gaaccaaagacttccataagagtatttttagttctaaagggtatagaaaatttaagcccaacccaaagggtaaagtaataggcaagatagctagtaatgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
10676821 |
gaaccaaagacttccataagagtatttttagttctaaagggtatagaaaatttaagcccaacccaaagggtcaagtaataggcaagatagctagcaatgg |
10676920 |
T |
|
| Q |
214 |
atagaaaggatgtcttaggatgaatctga |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10676921 |
atagaaaggatgtcttaggatgaatctga |
10676949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 10673640 - 10673738
Alignment:
| Q |
14 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctg---gtatcaacatcaagaccaaagaaatcaatga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||| ||||||||||||||||||||||||||| |
|
|
| T |
10673640 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccataattattgtgatatggtagtagcaacatcaagaccaaagaaatcaatga |
10673738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 10602398 - 10602517
Alignment:
| Q |
14 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagaccaaagaaatcaatgagagg |
113 |
Q |
| |
|
||||||||| ||| ||| ||| |||| ||| |||| ||||||||||||||| || |||| ||||| |||||| || ||||||||||||||||| || |
|
|
| T |
10602398 |
atgaataagaaaccatattgtatatgtaatgcatttcaatgattctccccaagtg---tgatttggtagcaacattaacaccaaagaaatcaatgaaagt |
10602494 |
T |
|
| Q |
114 |
gaaccaaagacttccataagagt |
136 |
Q |
| |
|
|||||||| | |||||||||||| |
|
|
| T |
10602495 |
gaaccaaaaatttccataagagt |
10602517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 10613294 - 10613411
Alignment:
| Q |
19 |
taaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagaccaaagaaatcaatgagagggaacc |
118 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| |||| ||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||| || || || |
|
|
| T |
10613294 |
taagcaaccatattgtgtatgcaatatatttcaatggttccccccaataagtgtgatttggtaacaacattaggaccatggaaataaatgaaagcgaccc |
10613393 |
T |
|
| Q |
119 |
aaagacttccataagagt |
136 |
Q |
| |
|
||||||||| | |||||| |
|
|
| T |
10613394 |
aaagacttctaaaagagt |
10613411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University