View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_135 (Length: 251)
Name: NF1408_high_135
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_135 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29793449 - 29793228
Alignment:
| Q |
1 |
ctttggcaaaagatgaaaaaatccactctcctttaaccccacatgcctcacacacccatcttcatcttcaaatcttcgaatcaaaccctgaacatcaacg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29793449 |
ctttggcaaaagatgaaaaaatccactctccttcaaccccacatgcctcacacacccatcttcatcttcaaatcttcgaatcaaaccctgaacatcaacg |
29793350 |
T |
|
| Q |
101 |
aaaacataatcacaaatctcaagcattctttccaatgtctccgggagaatctctcccgcaacaccaacagccattccgaataaaaacctcgacccggccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||||| |
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| T |
29793349 |
aaaacataatcacaaatctcaagcattctttccaatgtctccgggagaatctccccagcgacaccaacagccattccgaataaaaacctcgccccggccg |
29793250 |
T |
|
| Q |
201 |
ggatatcagacggggttattgg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
29793249 |
ggatatcagacggggttattgg |
29793228 |
T |
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