View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_167 (Length: 228)
Name: NF1408_high_167
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_167 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 36689505 - 36689613
Alignment:
| Q |
1 |
ccaaaggacaagttctgaaactcttatcaaatcaaatatatatatgtcaatctgaaacgtgtgattacacgagcataataacatttgcagtacaatccga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36689505 |
ccaaaggacaagttctgaaactcttatcaaatcaaatatatatatgtcaatctgaaacgtgtgattacacgagcataataacatttgcagtacaatccga |
36689604 |
T |
|
| Q |
101 |
catatatgt |
109 |
Q |
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||||||||| |
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| T |
36689605 |
catatatgt |
36689613 |
T |
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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 442234 - 442359
Alignment:
| Q |
1 |
ccaaaggacaagttctgaaactcttatcaaatcaaatat--atatatgtcaatctgaaacgtgtgattacacgagcataataacatttgcagtacaatcc |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
442234 |
ccaaaggacaagttctgaaactcttatcaaatcaaatatatatatatgtcaatctgaaacgtgtgattacacgacattaataacatttgcagtgcaatcc |
442333 |
T |
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| Q |
99 |
gacatatatgtcagctataataacaa |
124 |
Q |
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||||||||||||||| |||||||||| |
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| T |
442334 |
gacatatatgtcagccataataacaa |
442359 |
T |
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