View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_high_173 (Length: 226)
Name: NF1408_high_173
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_173 |
 | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 44314490 - 44314339
Alignment:
| Q |
1 |
tcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44314490 |
tcccttttcccgaaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
44314391 |
T |
|
| Q |
101 |
acatatatgtcgggtagctccagagtctaccacccatttgttcatatcagtc |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44314390 |
acatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtc |
44314339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 34098402 - 34098553
Alignment:
| Q |
1 |
tcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34098402 |
tcccttttcccgaaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
34098501 |
T |
|
| Q |
101 |
acatatatgtcgggtagctccagagtctaccacccatttgttcatatcagtc |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34098502 |
acatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtc |
34098553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 40082 - 40233
Alignment:
| Q |
1 |
tcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40082 |
tcccttttcccgaaaaagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacaatattgtaggaggtgaaggcatccttagtagc |
40181 |
T |
|
| Q |
101 |
acatatatgtcgggtagctccagagtctaccacccatttgttcatatcagtc |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40182 |
acatatatgtcgggtagctccagagtctaccacccatttgttcacatcagtc |
40233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University