View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_18 (Length: 520)
Name: NF1408_high_18
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 52 - 449
Target Start/End: Original strand, 37149882 - 37150270
Alignment:
| Q |
52 |
tatattttagacccacttgaatactacaaagtatctttaaaagataataaaacacacatatagttttatatatttcttcnnnnnnnnntacagttttata |
151 |
Q |
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| T |
37149882 |
tatattttagacccacttgaatactacaaagtatctttaaaagataataaaacacgcatatagttttatatatttcttcaaaaaaatatacagttttata |
37149981 |
T |
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| Q |
152 |
gaaaaataatacttaaatttagtggaataatttttcttctaattttttatactttagttaaaccttttaaactaattgaataaaatttacaactatactt |
251 |
Q |
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| T |
37149982 |
gaaaaataatacttaaatttagtggaataatttttcttctaattttttatactttagttaa---------actaattgaataaaatttacaactatactt |
37150072 |
T |
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| Q |
252 |
ataatttttatcaataaaagtggaaaacgaacctaaagaaccaagataatcagacagtgaaatcccattagcaggatcaatttttctaattatatgagaa |
351 |
Q |
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| T |
37150073 |
ataatttttatcaataaaagtggaaaacgaacctaaagaaccaagataatcagacagtgaaatcccattagcaggatcaatttttctaattatatgagaa |
37150172 |
T |
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| Q |
352 |
gagggtacaatgctatactcagcaacgagaccatatccattcaaaaggatatccccctcactgtatttactatccttcgatcgaattacccttacaac |
449 |
Q |
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| T |
37150173 |
gagggtacaatgctatactcagcaacgagaccatatccattcaaaaggatatccccctcactgtatttactatccttcgatcgaattacccttacaac |
37150270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 274 - 448
Target Start/End: Original strand, 37155241 - 37155415
Alignment:
| Q |
274 |
gaaaacgaacctaaagaaccaagataatcagacagtgaaatcccattagcaggatcaatttttctaattatatgagaagagggtacaatgctatactcag |
373 |
Q |
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| T |
37155241 |
gaaaacgaacctaaagtaccaagataatctgacagtgaaatcccattagcaggatcaattttcctcattatgtcagaagagggtacaatactatactcag |
37155340 |
T |
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| Q |
374 |
caacgagaccatatccattcaaaaggatatccccctcactgtatttactatccttcgatcgaattacccttacaa |
448 |
Q |
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| T |
37155341 |
caacgtaaccattcccattcaaaaggatatctccttcagtgtatttactatcctttgatcgaattactcttacaa |
37155415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 282 - 451
Target Start/End: Original strand, 37160983 - 37161152
Alignment:
| Q |
282 |
acctaaagaaccaagataatcagacagtgaaatcccattagcaggatcaatttttctaattatatgagaagagggtacaatgctatactcagcaacgaga |
381 |
Q |
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| T |
37160983 |
acctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctagttatttgagaagaaggtacaatactatattcagcaacagga |
37161082 |
T |
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| Q |
382 |
ccatatccattcaaaaggatatccccctcactgtatttactatccttcgatcgaattacccttacaactg |
451 |
Q |
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| T |
37161083 |
gcatttggattcaaaagaatatccccctcactgtatttactatccttggatctaatcactcttacaactg |
37161152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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