View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_high_2 (Length: 650)

Name: NF1408_high_2
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_high_2
NF1408_high_2
[»] chr1 (1 HSPs)
chr1 (30-644)||(26427523-26428139)
[»] chr2 (4 HSPs)
chr2 (179-297)||(28008932-28009053)
chr2 (410-635)||(28009109-28009349)
chr2 (329-378)||(28009058-28009107)
chr2 (107-144)||(28008852-28008889)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 30 - 644
Target Start/End: Complemental strand, 26428139 - 26427523
Alignment:
Q  30 ttcttctatatactttcttaattctagcacactgtcaggtctcactttctagattttctacctatattttctactttcaaacattcttgtacttatttgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428139 ttcttctatatactttcttaattctagcacactgtcaggtctcactttctagattttctacctatattttctactttcaaacattcttgtacttatttgt 26428040  T
Q  130 ctttaattaactaaccctatttatgnnnnnnnnn--cttgcagattccctatttttgttaacatgggagcacttagcacatacttcaactataattgtta 227  Q
    |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428039 ctttaattaactaaccctatttatgtttttttttttcttgcagattccctatttttgttaacatgggagcacttagcacatacttcaactataattgtta 26427940  T
Q  228 cccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccatttttcctct 327  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26427939 tccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccatttttcctct 26427840  T
Q  328 aactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaagatgatc 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26427839 aactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaagatgatc 26427740  T
Q  428 aactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacctgacatg 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26427739 aactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacctgacatg 26427640  T
Q  528 tccaaaacgccaaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaactaannnnnnngtggatgagtttatgactaac 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||    
T  26427639 tccaaaacgccaaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaaccaatttttttgtggatgagtttatgactaac 26427540  T
Q  628 cctaacccctttgcttc 644  Q
    |||||||||||||||||    
T  26427539 cctaacccctttgcttc 26427523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 28008932 - 28009053
Alignment:
Q  179 tttttgttaacatgggagcacttagcacatacttcaactataattgttacccttatcaacctattcaaactacc---aacaactcagaaatcactacttt 275  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||   ||||||||||||||||| |||||    
T  28008932 tttttgttaacatgggagcacttagcacatacttcaattataattgttacccttatcaacctactcaaactaccaataacaactcagaaatcaccacttt 28009031  T
Q  276 tcaacatcatgaacaagaacaa 297  Q
    ||||||||||||||||||||||    
T  28009032 tcaacatcatgaacaagaacaa 28009053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 410 - 635
Target Start/End: Original strand, 28009109 - 28009349
Alignment:
Q  410 acccttgtcaagatgatcaactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaaga--- 506  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||       
T  28009109 acccttgtcaagatcaacaactacttgttgactccactttttcttctcaaaatgatgactttgtttcaatgaatgaaattttcccaaatgaggaagattt 28009208  T
Q  507 ---tttcaccaattac---ctgacatgtccaaaacgccaaaagc---tatgct---acgatgagaaaagagaggaaccacaacaagagcttttgaactca 594  Q
       ||||| ||| |||   ||  |||||||||||||||||||||   ||| ||   | || ||||||||||| || ||||||||||||||||||||||||    
T  28009209 cattttcaacaactaccagcttccatgtccaaaacgccaaaagctgatatactatgaggaggagaaaagagaagagccacaacaagagcttttgaactca 28009308  T
Q  595 actaannnnnnngtggatgagtttatgactaaccctaaccc 635  Q
    || ||        ||||||||||| ||||||||||||||||    
T  28009309 accaatttttttatggatgagtttgtgactaaccctaaccc 28009349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 28009058 - 28009107
Alignment:
Q  329 actatttgaatgaaacttctcttttagatgaaagcttcatttttcaaact 378  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  28009058 actatttcaatgaagcttctcttttagatgaaagcttcatttttcaaact 28009107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 28008852 - 28008889
Alignment:
Q  107 caaacattcttgtacttatttgtctttaattaactaac 144  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  28008852 caaacattctcgtacttgtttgtctttaattaactaac 28008889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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