View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_21 (Length: 499)
Name: NF1408_high_21
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 51162274 - 51162366
Alignment:
| Q |
186 |
gtactcgtttatggagtgccttgttttagtcttgaatttgaaacccagtgtttacttacaatttactattgaaaaatgatataatttaggttg |
278 |
Q |
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| T |
51162274 |
gtactcgtttatagagtgccttgttttagtcttgaatttgaaacccagtgtttacttacaatttactattgaaaaatgatataatttaggttg |
51162366 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 51162129 - 51162208
Alignment:
| Q |
41 |
aactacatggtaaagtaacattgattcagagatcgtacttggtcaacaacccttgatttgactgaatttaaagaatgcac |
120 |
Q |
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| T |
51162129 |
aactacatggcaaagtaacatcgattcagagatcgtacttggtcaacaacccttgatttgactgaatttaaagaatgcac |
51162208 |
T |
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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 51162400 - 51162461
Alignment:
| Q |
312 |
aatggtacaaagtagaaatactcttcctcatttaattctctatataaaagccaacctatttg |
373 |
Q |
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| T |
51162400 |
aatggtacaaagtagaaacactcttcctcatttaattctctatataaaagccaacctatttg |
51162461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 474
Target Start/End: Original strand, 51150307 - 51150409
Alignment:
| Q |
374 |
ggtccttcatttctcaaatcccacggtcattgccttcatatattgcttgtg--cgtgagtggataaaaatggcagccactgacggtagaatagtcttgtt |
471 |
Q |
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| T |
51150307 |
ggtccttcatttctcaaatcccacagttcttgtcttcctatattgcgtgtgtctgggtgtggataaaaatggcagccactcatgggaaaataatcttgtt |
51150406 |
T |
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| Q |
472 |
cat |
474 |
Q |
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| T |
51150407 |
cat |
51150409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 474
Target Start/End: Original strand, 51162608 - 51162710
Alignment:
| Q |
374 |
ggtccttcatttctcaaatcccacggtcattgccttcatatattgcttgtg--cgtgagtggataaaaatggcagccactgacggtagaatagtcttgtt |
471 |
Q |
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| T |
51162608 |
ggtccttcatttctcaaatcccacagttcttgtcttcctatattgcgtgtgtctgggtgtggataaaaatggcagccactcatgggaaaataatcttgtt |
51162707 |
T |
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| Q |
472 |
cat |
474 |
Q |
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||| |
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| T |
51162708 |
cat |
51162710 |
T |
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