View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_26 (Length: 463)
Name: NF1408_high_26
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_26 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: scaffold0562 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 413
Target Start/End: Complemental strand, 7316 - 6933
Alignment:
| Q |
30 |
agaagtgtacacttctgaacattacatagcaaacaaaaagtaattaatcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7316 |
agaagtgtacacttctgaacattacatagcaaacaaaaagtaattaatcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagt |
7217 |
T |
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| Q |
130 |
tacgttagaaaaaacaccataaccttatatnnnnnnnnntaaagaaacaccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaag |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7216 |
tacgttagaaaaaacaccataaccttatataaaaaaaa-taaagaaacaccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaag |
7118 |
T |
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| Q |
230 |
gattttaacacaaccttaaaccaaattcaacaagcttt-atttgtaaaacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtg |
328 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7117 |
gattttcacacaaccttaaaccaaattcaacaagcttttatttgtaaaacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtg |
7018 |
T |
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| Q |
329 |
gaaacagcagttctagcttgatcaaagataggatcgatgtcttttccatctaaattaacgttggtagagagataaaggcaaggca |
413 |
Q |
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| T |
7017 |
gaaacagcagttctagcttgatcaaagataggatcgatgtcttttccatctaaattaacgttggtagagagataaaggcaaggca |
6933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 413
Target Start/End: Complemental strand, 3876497 - 3876114
Alignment:
| Q |
30 |
agaagtgtacacttctgaacattacatagcaaacaaaaagtaattaatcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3876497 |
agaagtgtacacttctgaacattacatagcaaacaaaaagtaattaatcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagt |
3876398 |
T |
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| Q |
130 |
tacgttagaaaaaacaccataaccttatatnnnnnnnnntaaagaaacaccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaag |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3876397 |
tacgttagaaaaaacaccataaccttatataaaaaaaa-taaagaaacaccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaag |
3876299 |
T |
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| Q |
230 |
gattttaacacaaccttaaaccaaattcaacaagcttt-atttgtaaaacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtg |
328 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3876298 |
gattttcacacaaccttaaaccaaattcaacaagcttttatttgtaaaacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtg |
3876199 |
T |
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| Q |
329 |
gaaacagcagttctagcttgatcaaagataggatcgatgtcttttccatctaaattaacgttggtagagagataaaggcaaggca |
413 |
Q |
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| T |
3876198 |
gaaacagcagttctagcttgatcaaagataggatcgatgtcttttccatctaaattaacgttggtagagagataaaggcaaggca |
3876114 |
T |
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