View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_38 (Length: 437)
Name: NF1408_high_38
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 63 - 280
Target Start/End: Complemental strand, 54712862 - 54712646
Alignment:
| Q |
63 |
aactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaatttttcttataaaaattacatactagagatttgcaatatt |
162 |
Q |
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| T |
54712862 |
aactatgtgtagttaaatgattgtagatttgaatttttttatgaaaactacagattccaatttttcttataaaaattacatactagagatttgcaatatt |
54712763 |
T |
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| Q |
163 |
tcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattacccagaggtgtga |
262 |
Q |
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| T |
54712762 |
tcattgatttttt-tggaggagaataaatgacgaagaagattgtttcatcacttttgtataatttactatagttatcaaacccattacccagaggtgtga |
54712664 |
T |
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| Q |
263 |
tatgaaggaaagaggatg |
280 |
Q |
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| T |
54712663 |
catgaaagaaagaggatg |
54712646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 344 - 425
Target Start/End: Complemental strand, 54712572 - 54712489
Alignment:
| Q |
344 |
gtgtgaaaatactataaagtccatgccacata--ggagtggtacaattaaaagggtgtccatgtctaattacccatcccatatt |
425 |
Q |
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| T |
54712572 |
gtgtaaaaatactataaagtccatgccacatataggagtggtacaagaaaaagggtgtccatgtctaattacccatcccatatt |
54712489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 41664512 - 41664389
Alignment:
| Q |
156 |
caatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattacccaga |
255 |
Q |
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| T |
41664512 |
caatatttcattgatttatt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacccaga |
41664414 |
T |
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| Q |
256 |
ggtgtgatatgaaggaaagaggatg |
280 |
Q |
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| T |
41664413 |
ggtgtgatatgaaggaaagaggatg |
41664389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 41664647 - 41664565
Alignment:
| Q |
63 |
aactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaatttttcttataaaaattacatac |
145 |
Q |
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| T |
41664647 |
aactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcatattccaatttttcttataaaaattacatac |
41664565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 41664238 - 41664166
Alignment:
| Q |
344 |
gtgtgaaaatactataaagtccatgccacataggagtggtacaattaaaagggtgtccatgtctaattaccca |
416 |
Q |
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| T |
41664238 |
gtgtgaaaatactataaagcccatgccacataggagtggtacaaaagaaatggtgtccatgtctaattaccca |
41664166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 154 - 280
Target Start/End: Original strand, 32972446 - 32972571
Alignment:
| Q |
154 |
tgcaatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattaccca |
253 |
Q |
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| T |
32972446 |
tgcaatatttcattgatttctt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacaca |
32972544 |
T |
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| Q |
254 |
gaggtgtgatatgaaggaaagaggatg |
280 |
Q |
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| T |
32972545 |
gaggtgtgatatgaaggaaagaggatg |
32972571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 32972313 - 32972396
Alignment:
| Q |
63 |
aactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaatttttcttataaaaattacatact |
146 |
Q |
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| T |
32972313 |
aactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcagatttcaatttttcttataaaaattacatact |
32972396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 32976738 - 32976781
Alignment:
| Q |
344 |
gtgtgaaaatactataaagtccatgccacataggagtggtacaa |
387 |
Q |
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| T |
32976738 |
gtgtgaaaatactataaagtccatgccacataggagtggtacaa |
32976781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 31887985 - 31887946
Alignment:
| Q |
364 |
ccatgccacataggagtggtacaattaaaagggtgtccatg |
404 |
Q |
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| T |
31887985 |
ccatgccacatagg-gtggtacaaataaaagggtgtccatg |
31887946 |
T |
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