View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_39 (Length: 435)
Name: NF1408_high_39
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 51 - 425
Target Start/End: Original strand, 38085725 - 38086099
Alignment:
| Q |
51 |
tgatgcatctaggctcatacttgtctattgtactaattgctattttattttcatttaaatcttcagcaattggnnnnnnnnnnnnnnnnnatgaagataa |
150 |
Q |
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| T |
38085725 |
tgatgcatctaggctcatacttgtctattgtactaattgctattttattttcatttacatcttcagcaattggtactactactactactaatgaagataa |
38085824 |
T |
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| Q |
151 |
tagcttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaa |
250 |
Q |
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| T |
38085825 |
tagcttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaa |
38085924 |
T |
|
| Q |
251 |
ttttcaactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttttaattgtcacacctctagaaatttcccatattcaagcaaccgtaatct |
350 |
Q |
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| T |
38085925 |
ttttcaactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaattt |
38086024 |
T |
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| Q |
351 |
gttcccaatatcacggcctgcagattcgaattcgaagtggtggccacgactttgagggtctgtcttatgtctctg |
425 |
Q |
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| T |
38086025 |
gttcccaataccacagcctgcagattcgaattcgcagcggcggtcacgactttgagggtctgtcttatgtctctg |
38086099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 155 - 411
Target Start/End: Original strand, 38072319 - 38072575
Alignment:
| Q |
155 |
ttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaatttt |
254 |
Q |
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| T |
38072319 |
ttccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaaatttt |
38072418 |
T |
|
| Q |
255 |
caactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttttaattgtcacacctctagaaatttcccatattcaagcaaccgtaatctgttc |
354 |
Q |
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||| |||||| ||||||||||||||||| ||||||||||||| ||| | ||| |||||||| | ||||||||||||||||| || || |||||||||| |
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| T |
38072419 |
caattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagccataatctgttc |
38072518 |
T |
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| Q |
355 |
ccaatatcacggcctgcagattcgaattcgaagtggtggccacgactttgagggtct |
411 |
Q |
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| T |
38072519 |
ccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgagggtct |
38072575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 155 - 425
Target Start/End: Original strand, 38057991 - 38058261
Alignment:
| Q |
155 |
ttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaatttt |
254 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||| || ||| |||| |||||| ||||| |
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| T |
38057991 |
ttccttgaatgtctctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaattta |
38058090 |
T |
|
| Q |
255 |
caactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttttaattgtcacacctctagaaatttcccatattcaagcaaccgtaatctgttc |
354 |
Q |
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||||||||||||||||||||||| |||||| |||||| ||||| ||||| ||| |||||||| | | |||||||| |||||| ||||| |||||||||| |
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| T |
38058091 |
caactcaaaatctcagatttgcatccaacacaacacctaaacctcttttcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttc |
38058190 |
T |
|
| Q |
355 |
ccaatatcacggcctgcagattcgaattcgaagtggtggccacgactttgagggtctgtcttatgtctctg |
425 |
Q |
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||| ||| ||||||||||||||| ||||| |||||||| || |||||||||| ||| ||||| |||| |
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| T |
38058191 |
acaaatccacaacctgcagattcgaatccgaagcggtggccatgattttgagggtcggtcctatgtttctg |
38058261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 155 - 425
Target Start/End: Complemental strand, 38062463 - 38062193
Alignment:
| Q |
155 |
ttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaatttt |
254 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||||| |||||| |||||||||||||| ||||||| || ||| ||||||||||||||||| |
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| T |
38062463 |
ttcctacaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaattta |
38062364 |
T |
|
| Q |
255 |
caactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttttaattgtcacacctctagaaatttcccatattcaagcaaccgtaatctgttc |
354 |
Q |
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| ||||||||||||||||||||| |||| | |||||| ||||| ||| | ||| |||||||| | | |||||||| |||||| ||||| |||||||||| |
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| T |
38062363 |
ccactcaaaatctcagatttgcatccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttc |
38062264 |
T |
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| Q |
355 |
ccaatatcacggcctgcagattcgaattcgaagtggtggccacgactttgagggtctgtcttatgtctctg |
425 |
Q |
| |
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| T |
38062263 |
ccaaagacatgacctgcagattcgaatccgaagcggcggccacgacttcgagggtcggtcctatgtttctg |
38062193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 154 - 408
Target Start/End: Original strand, 38081403 - 38081657
Alignment:
| Q |
154 |
cttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaattt |
253 |
Q |
| |
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||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| | || ||| || || ||||| ||||| |
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| T |
38081403 |
cttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaattt |
38081502 |
T |
|
| Q |
254 |
tcaactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttttaattgtcacacctctagaaatttcccatattcaagcaaccgtaatctgtt |
353 |
Q |
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||||||||||||| ||||||||| || |||||||||||||||||||| | || |||||||||||||| ||||||||||||| || || |||| |||| |
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| T |
38081503 |
acaactcaaaatctaagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgtt |
38081602 |
T |
|
| Q |
354 |
cccaatatcacggcctgcagattcgaattcgaagtggtggccacgactttgaggg |
408 |
Q |
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||||| |||| ||||| |||||||||| || ||||| ||||| ||||||||||| |
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| T |
38081603 |
cccaaaatcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
38081657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 37953867 - 37953923
Alignment:
| Q |
369 |
tgcagattcgaattcgaagtggtggccacgactttgagggtctgtcttatgtctctg |
425 |
Q |
| |
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||||||||||||| ||||||||||||||||||| || |||||||| ||||| |||| |
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| T |
37953867 |
tgcagattcgaatccgaagtggtggccacgactacgaaggtctgtcctatgtttctg |
37953923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 38081309 - 38081380
Alignment:
| Q |
51 |
tgatgcatctaggctcatacttgtctattgtactaattgctattttattttcatttaaatcttcagcaattg |
122 |
Q |
| |
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|||||| |||| ||||||| |||||| ||| ||| ||||||||||||||||||| | |||||| ||||||| |
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| T |
38081309 |
tgatgcctctaagctcatatttgtctgttgcacttattgctattttattttcatatgcatcttctgcaattg |
38081380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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