View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_41 (Length: 433)
Name: NF1408_high_41
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_41 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 81 - 426
Target Start/End: Complemental strand, 12234166 - 12233821
Alignment:
| Q |
81 |
caacagatgagtaatcctcaaccccagcagacacaacctggcatgccgccttctcgttctgatcaacccttcaacggtcgtggccgctctaacttcatgg |
180 |
Q |
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| T |
12234166 |
caacagatgagtaatcctcaaccccagcagacacaacctggcatgccgccttctcgttctgatcaacccttcaacggtcgtggccgctctaacttcatgg |
12234067 |
T |
|
| Q |
181 |
acttcaattaccaaaagtagctcgtatacaacatcaaagtaaatgatttggttacagaatatatttatcccaagtaacatgttgtatatatatgtatgta |
280 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
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| T |
12234066 |
acttcaattaccaaaagtagctcgtatacaacatcaatgtaaatgatttggttacagaatatattcatcccaagtaacatgttgtataaatatgtctgta |
12233967 |
T |
|
| Q |
281 |
ttacatatatcattgtccttaatcctatgatgttttatgtatcttctacagtttaaggtagaaacatgtcctattattttgtactttctgcagttttata |
380 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12233966 |
ttacatatatcagtgtccttaatcctatgatgttttatgtatcttctacagtttaaggtagaaacatgtcctattattttgtactttctgcagttttata |
12233867 |
T |
|
| Q |
381 |
ggttagaagtgttcaccctttgaatttgtgttacagttctgtggtg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12233866 |
ggttagaagtgttcaccctttgaatttgtgttacagttctctggtg |
12233821 |
T |
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