View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_47 (Length: 411)
Name: NF1408_high_47
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 49912203 - 49911878
Alignment:
| Q |
1 |
tcgtctcaggccatttgcttgttgatagcatacaatcaagcatgaacaaagaatggtttgaaagcaagctcttatgataagctagcgtgtcttaaaaaca |
100 |
Q |
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| T |
49912203 |
tcgtctcaggcgatttacttgttgatagcatacaatcaagcatgaacaaagaatggtttgaaagcaagctcttatgataagctagcgtgtcttaaaaaca |
49912104 |
T |
|
| Q |
101 |
ttaacagaacataggaacgagaacaagttagtatcaagtagaaaagtaaatgtgttgtaccaataaat-aaataaataagagattgtgaaattgctcaag |
199 |
Q |
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| T |
49912103 |
ttaacaggacataggaacgagaacaagttagtatcaagtagaaaagtaaatgtgtagtaccaataaataaaataaataagagattgtgaagttgctcaag |
49912004 |
T |
|
| Q |
200 |
ccttctggggtaatcgtattcagtctgataaattgagcaaaatcttcaatttaggtctctactctttgcttgattgcaacttatctaatgatgatttggg |
299 |
Q |
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||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49912003 |
ccttccgggataatcgtattcagtctgataaatggagcaaaatcttcaatttaggtctctactctttgcttgattgcaacttatctaatgatgatttggg |
49911904 |
T |
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| Q |
300 |
aatgaactctaccaacaggtctatct |
325 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
49911903 |
aatgaactctaccaacaggtctatct |
49911878 |
T |
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