View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_48 (Length: 401)
Name: NF1408_high_48
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 77 - 391
Target Start/End: Complemental strand, 5280048 - 5279735
Alignment:
| Q |
77 |
agttttgagccaaaaaataaaacacactagaagaaatgggtgccctttgagtgaaggcacaagtgattcattctttcatctctgagaagggttactgttt |
176 |
Q |
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| T |
5280048 |
agttttgagccaaaaa-taaaactcactggaagaaatgagtgccctttgagtgaaggcacaagtgattcattctttcacctctaagaagggttactgttt |
5279950 |
T |
|
| Q |
177 |
ttctggtccaacaaaatgaccgaccacggggatttcaaattgttaagatcacacaaatttcattagtcaaaccttagcttatgttcctcacaattaaata |
276 |
Q |
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| T |
5279949 |
ttctggtccaacaaaatgaccgaccacggggatttcaaattgttaagatcacacaaatttcattagtcaaaccttagcttatgttcctcacaattaaata |
5279850 |
T |
|
| Q |
277 |
aacgaaggaattgtccttccttgtgatgtgcaccacatgtggatcggagacttggaaagagatggtccaaagttgttaatggtttaatttaatttaatta |
376 |
Q |
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||||||| |||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5279849 |
aacgaagtaattgtccttccttgtcatgtgcaccgcatgtggatcggaggcttcgaaagagatggtccaaagttgttaatgctttaatttaatttaatta |
5279750 |
T |
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| Q |
377 |
atgttgtcctctctg |
391 |
Q |
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|||||||||| |||| |
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| T |
5279749 |
atgttgtcctttctg |
5279735 |
T |
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