View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_high_5 (Length: 572)

Name: NF1408_high_5
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_high_5
NF1408_high_5
[»] chr8 (3 HSPs)
chr8 (29-407)||(6569037-6569411)
chr8 (459-557)||(6569463-6569562)
chr8 (41-73)||(34995539-34995571)
[»] chr3 (3 HSPs)
chr3 (139-406)||(39485111-39485380)
chr3 (187-407)||(25715313-25715529)
chr3 (76-116)||(39485394-39485434)
[»] chr7 (2 HSPs)
chr7 (148-312)||(2009882-2010044)
chr7 (93-168)||(2915593-2915668)
[»] chr1 (2 HSPs)
chr1 (270-394)||(43350436-43350560)
chr1 (354-396)||(28969798-28969840)
[»] chr6 (1 HSPs)
chr6 (246-384)||(33961224-33961362)
[»] chr5 (2 HSPs)
chr5 (220-284)||(42211925-42211990)
chr5 (39-155)||(34970774-34970890)
[»] chr2 (1 HSPs)
chr2 (242-320)||(31784838-31784916)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 407
Target Start/End: Original strand, 6569037 - 6569411
Alignment:
Q  29 actttgtacaccctttcacaatccaacactaacattggcgaccttctttcaccaccatgatggcatttctctataattaaggtaaattcgacctttgttt 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6569037 actttgtacaccctttcacaacccaacactaacattggcgaccttctttcaccaccatgatgggatttctctataattaaggtaaattcgacctttgttt 6569136  T
Q  129 cttgttaaggaacccatttaattatatcatctctaatttttcatttgttatatatgtgaaaaagtaatgcgccatatctacttcattattgccaagtttt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6569137 cttgttaaggaacccatttaattatatcatctctaatttttcatttgttatatacgtgaaaaagtaatgcgccatatctacttcattattgccaagtttt 6569236  T
Q  229 gaaacattgggatcaacaatgttatctttagaatcaacattaggtttcaaatcaacaaaagcttacacaatgtttggtttcaatccgacagaagctttaa 328  Q
    ||||||| ||    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6569237 gaaacatcgg----aacaatgttatctttagaatcgacattaggtttcaaatcaacaaaagctcacacaatgtttggtttcaatccgacagaagctttaa 6569332  T
Q  329 gaatagttgattttaattcatcgctagactcaacaatatttgtttttgactcaacaaaattatcaatcggatgttcaac 407  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6569333 gaatagttgattttaattcaccgctagactcaacaatatttgtttttgactcaacaaaattatcaatcggatgttcaac 6569411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 557
Target Start/End: Original strand, 6569463 - 6569562
Alignment:
Q  459 tcttacaatacaacacaactgacggaatnnnnnnncaacc-agggttgactggatcgatagttagaacccgacctaggatcggttggtaactctccatat 557  Q
    ||||||||||||||||||||||||||||       ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6569463 tcttacaatacaacacaactgacggaataaaaaaacaacccagggttgactggatcaatagttagaacccgacctaggatcggttggtaactctccatat 6569562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 34995571 - 34995539
Alignment:
Q  41 ctttcacaatccaacactaacattggcgacctt 73  Q
    |||||||||||||||||||||||||||||||||    
T  34995571 ctttcacaatccaacactaacattggcgacctt 34995539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 139 - 406
Target Start/End: Complemental strand, 39485380 - 39485111
Alignment:
Q  139 aacccatttaattatatcatctctaatttttcatttgttatatatgtgaaaaagtaatgcgccatatctacttcattattgccaagttttgaaacattgg 238  Q
    |||||| ||| | |||||| |||||||||||||||| |  |||  ||||||||||||||   ||||||||||||||| |  | ||||||||||||||  |    
T  39485380 aacccaattagtaatatcacctctaatttttcatttctcttat--gtgaaaaagtaatgtatcatatctacttcattgtcacaaagttttgaaacatcag 39485283  T
Q  239 gatcaacaa---tgttatctttagaatcaacattaggtttcaaatcaacaaaagcttac-acaatgtttggtttcaatccgacagaagctttaagaatag 334  Q
    || ||||||   ||| ||||||| |||||||||  |||||||||| ||| |||||||   ||||| |||| |||||| ||||  ||| ||| || |||||    
T  39485282 gagcaacaacattgtcatctttaaaatcaacatatggtttcaaattaaccaaagcttttgacaatatttgatttcaacccgatggaaacttcaacaatag 39485183  T
Q  335 ttgattttaattcatcgctagactcaacaatatttgtttttgactcaacaaaattatcaatcggatgttcaa 406  Q
     |  ||| |||||||    ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  39485182 attgtttgaattcattagaagactcaacaatatttgattttgactcgacaaaattatcaatcagatgttcaa 39485111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 187 - 407
Target Start/End: Complemental strand, 25715529 - 25715313
Alignment:
Q  187 aaaaagtaatgcgccatatctacttcattattgccaagttttgaaacattgggatcaacaatgttatctttagaatcaacattaggtttcaaatcaacaa 286  Q
    |||||||| | || |||||| ||||| ||||  ||||||||||  |||| | ||||||  ||||| |||||| |||||||||  | |||||||||||||     
T  25715529 aaaaagtatttcgtcatatcaacttcgttatcaccaagttttgggacatcgtgatcaaacatgttctctttataatcaacatctgatttcaaatcaacat 25715430  T
Q  287 aagcttacacaatgtttggtttcaatccgacagaagctttaagaatagttgattttaattcatcgctagactcaacaatatttgtttttgactcaacaaa 386  Q
    ||| ||  | |||||||||||||||| | || ||||||| || ||||| | |    |||||||||  ||||||||||||||||  |||||||||||   |    
T  25715429 aagtttcgataatgtttggtttcaattcaacggaagcttcaacaatagatca----aattcatcggaagactcaacaatatttagttttgactcaatgga 25715334  T
Q  387 attatcaatcggatgttcaac 407  Q
    |||||||| | ||| ||||||    
T  25715333 attatcaaccagatattcaac 25715313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 39485434 - 39485394
Alignment:
Q  76 ttcaccaccatgatggcatttctctataattaaggtaaatt 116  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  39485434 ttcaccaccatgatgagatttctctaaaattaaggtaaatt 39485394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 148 - 312
Target Start/End: Original strand, 2009882 - 2010044
Alignment:
Q  148 aattatatcatctctaatttttcatttgttatatatgtgaaaaagtaatgcgccatatctacttcattattgccaagttttgaaacattgggatcaacaa 247  Q
    ||||||||||||||||| ||||||||| |    |||||||||||||| | | || |||||||||||||||  ||||  |||||||||  |  ||||||||    
T  2009882 aattatatcatctctaacttttcatttct--cttatgtgaaaaagtatttcaccgtatctacttcattatcaccaaagtttgaaacaccgaaatcaacaa 2009979  T
Q  248 tgttatctttagaatcaacattaggtttcaaatcaacaaaagcttacacaatgtttggtttcaat 312  Q
    ||||||||||| ||||||| ||  ||||||||||||| |||||||  | ||||||||||||||||    
T  2009980 tgttatctttaaaatcaacttttagtttcaaatcaactaaagcttctaaaatgtttggtttcaat 2010044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 2915593 - 2915668
Alignment:
Q  93 atttctctataattaaggtaaattcgacctttgtttcttgttaaggaacccatttaattatatcatctctaatttt 168  Q
    |||| |||||||| || |||||||| ||||||||| ||||| || |||| || |||||||||||||||||||||||    
T  2915593 atttatctataataaaagtaaattccacctttgttgcttgtcaacgaactcaattaattatatcatctctaatttt 2915668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 270 - 394
Target Start/End: Original strand, 43350436 - 43350560
Alignment:
Q  270 aggtttcaaatcaacaaaagcttacacaatgtttggtttcaatccgacagaagctttaagaatagttgattttaattcatcgctagactcaacaatattt 369  Q
    |||||||  |||||| |||||||  ||||| |||||||||||| |||| ||||||| || ||||  |||||| |||||   |  ||||||||||||||||    
T  43350436 aggtttcccatcaacgaaagcttcaacaatatttggtttcaattcgacggaagcttcaacaataaatgatttcaattcgaagaaagactcaacaatattt 43350535  T
Q  370 gtttttgactcaacaaaattatcaa 394  Q
    | |||||||||||||||||||||||    
T  43350536 gattttgactcaacaaaattatcaa 43350560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 28969840 - 28969798
Alignment:
Q  354 agactcaacaatatttgtttttgactcaacaaaattatcaatc 396  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  28969840 agactcaacaatatttgattttgactcaacaaaattatcaatc 28969798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 384
Target Start/End: Original strand, 33961224 - 33961362
Alignment:
Q  246 aatgttatctttagaatcaacattaggtttcaaatcaacaaaagcttacacaatgtttggtttcaatccgacagaagctttaagaatagttgattttaat 345  Q
    ||||||| |||||| ||||||||| ||||||||||| ||| ||| ||     ||||||||||| ||| |||| ||||||| |||||||| || ||  |||    
T  33961224 aatgttagctttaggatcaacatttggtttcaaatcgacataagtttgttggatgtttggttttaattcgactgaagcttcaagaatagatggttagaat 33961323  T
Q  346 tcatcgctagactcaacaatatttgtttttgactcaaca 384  Q
    ||| ||  |||||||| |||||||| |||| ||||||||    
T  33961324 tcaccgaaagactcaataatatttggttttcactcaaca 33961362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 42211925 - 42211990
Alignment:
Q  220 ccaagttttgaaacattgggatcaacaatgttatc-tttagaatcaacattaggtttcaaatcaac 284  Q
    |||||||| ||||||||| | ||||||||||| || ||||||||||| ||| ||||||||||||||    
T  42211925 ccaagtttagaaacattgagctcaacaatgttctcctttagaatcaatatttggtttcaaatcaac 42211990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 34970890 - 34970774
Alignment:
Q  39 ccctttcacaatccaacactaacattggcgaccttctttcaccaccatgatggcatttctctataattaaggtaaattcgacctttgtttcttgttaagg 138  Q
    |||||||| || |||||| ||||||||||| ||||||  ||||| || |||   |||| ||||||||||| ||||||   ||||||||| |||||| | |    
T  34970890 ccctttcataagccaacaataacattggcgcccttctaccaccatcaagataagatttgtctataattaacgtaaatctcacctttgttgcttgtttatg 34970791  T
Q  139 aacccatttaattatat 155  Q
    |||||| ||||| ||||    
T  34970790 aacccaattaatcatat 34970774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 31784916 - 31784838
Alignment:
Q  242 caacaatgttatctttagaatcaacattaggtttcaaatcaacaaaagcttacacaatgtttggtttcaatccgacaga 320  Q
    ||||||||||||||||| ||||||||||   ||||| |||||  |||| ||  ||||| |||||||||||| |||||||    
T  31784916 caacaatgttatctttaaaatcaacattttatttcacatcaaagaaagttttgacaatatttggtttcaatacgacaga 31784838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University