View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_50 (Length: 398)
Name: NF1408_high_50
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 20823134 - 20823415
Alignment:
| Q |
23 |
cttttttgtaacggatattgatatataatgttagttttacgttggaggtgaggatcaaactcttatcacaccgcgtatttactactccacccttgccact |
122 |
Q |
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| T |
20823134 |
cttttttgtaacggatattgatatataatgttagttttacgttggaggtgaggatcaaactcttatcacaccacgtatttactactccacccttgccact |
20823233 |
T |
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| Q |
123 |
taaccaaccgattatcaatctatctaaatacaactacatgatgacgacaaactatgaagagaaacgaactaaannnnnnnncagaagtaaaacaaaatct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
20823234 |
taaccaaccgattatcaatctatctaaatacaactacatgatgacggcaaactatgaagataaacgaactaattttttttccagaagtaaaacaaaatct |
20823333 |
T |
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| Q |
223 |
tacaccatccgtctatagttataagactattt-nnnnnnnntattgtctctaaatataagactatctaaaaatttgtagatg |
303 |
Q |
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||| |||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20823334 |
tactccatccgtctctaattataagattatttaaaaaaaaaaattgtctctaaatataagactatctaaaaatttgtagatg |
20823415 |
T |
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