View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_52 (Length: 393)
Name: NF1408_high_52
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 49912392 - 49912014
Alignment:
| Q |
14 |
ctgttgcgtttctatctattttctttgctaaatcacttttaccaaacacagtgtttatgagtgttgtatcactggataaatattttgttctatcagtgta |
113 |
Q |
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| T |
49912392 |
ctgttgcgtttctatctattttctttgctaaatcacttttaccaaacacagtgtttatgagtgttgtatcactggataaatattttgttctatcagtgta |
49912293 |
T |
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| Q |
114 |
gttgacaaatttgtttgccttgtatttacggtgatggttactgttagcttgacttatgttttttagctcatattttgcttagtttcaagtcgtctcaggc |
213 |
Q |
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| T |
49912292 |
gttgacaaatttgtttgcctggtatttacggtgatggttactgttagcttgacttatgttttttagctcatattttgcttagtttcaagtcgtctcaggc |
49912193 |
T |
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| Q |
214 |
catttgcttgttgatagcatacaatcaagcatgaacaaagaatggtttgaaagcaagctcttatgataagctagcgtgtcttaaaaacattaacagaaca |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49912192 |
gatttacttgttgatagcatacaatcaagcatgaacaaagaatggtttgaaagcaagctcttatgataagctagcgtgtcttaaaaacattaacaggaca |
49912093 |
T |
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| Q |
314 |
taggaacgagaacaagttagtatcaagtagaaaagtaaatgtgttgtaccaataaat-aaataaataagagattgtgaa |
391 |
Q |
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| T |
49912092 |
taggaacgagaacaagttagtatcaagtagaaaagtaaatgtgtagtaccaataaataaaataaataagagattgtgaa |
49912014 |
T |
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