View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_53 (Length: 389)
Name: NF1408_high_53
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 52 - 379
Target Start/End: Original strand, 47459855 - 47460182
Alignment:
| Q |
52 |
attaatgttgccgattcacgttatggcaaaacggtatgggtgcatcaaccaacgaggagttaatggatttggaaaattggaaggcgttgataactaaagt |
151 |
Q |
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| T |
47459855 |
attaatgttgccgattcacgttatggcaaaacggtatgggtgtatcaaccaacgaggagttaatagatttggaaaattggaaggcgttgataactaaagt |
47459954 |
T |
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| Q |
152 |
tatctccttgactaagaagttaattactattctctctatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcatcttctctttcacg |
251 |
Q |
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| T |
47459955 |
tatctccttgactaagaagttaattactattctctatatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcatcttctctttcacg |
47460054 |
T |
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| Q |
252 |
ctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacacaaacaacaatggcacaacaacaatcatcctcattccttggtcct |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460055 |
ctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacacaaacaacaatggcacaacaacaatcatcctcattccttggtcct |
47460154 |
T |
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| Q |
352 |
gacaccgttgacgacttttacttctctg |
379 |
Q |
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| T |
47460155 |
gacaccgtagacgacttttacttctctg |
47460182 |
T |
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