View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_54 (Length: 389)
Name: NF1408_high_54
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 26988606 - 26988919
Alignment:
| Q |
30 |
atactgaagtgaatccggcgaaaccttcaacctcggagaagccaccgccgccgccggagactcaacaaaaggaacagaaaccatttcaacgggtttggag |
129 |
Q |
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| T |
26988606 |
atactgaagtgaatccggcgaaaccttcaacctcggagaagccacagccgccgccggagactcaacaaaaggaacagaaaccatttcaacaggtttggag |
26988705 |
T |
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| Q |
130 |
acagcggcggcggtagttgttacgaatggtttgaaacgagggttagggtgaagagtagtgtgctgcattatgtggcggtggttacggaggaggaggtgag |
229 |
Q |
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| T |
26988706 |
acagcggcggcggtagttgttacgaatggtttgaaacgagggttagggtgaagagtagtgtactgcattctgtggcggtggttacggaggaggaggtgag |
26988805 |
T |
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| Q |
230 |
gttgtggctgtgataattttagcgcctccatggtttgggtcattttgatttcagacacaaattttgtttgactcaaataaaatcttatgagctttgcttt |
329 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26988806 |
gttgtggctgtgataatcgtagcgcctccatggtttgggtcattctgatttcagacacaaattttgtttgactcaaataaaatcttacgagctttgcttt |
26988905 |
T |
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| Q |
330 |
atgacaagtctctg |
343 |
Q |
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|||||||||||||| |
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| T |
26988906 |
atgacaagtctctg |
26988919 |
T |
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