View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_55 (Length: 387)
Name: NF1408_high_55
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 376
Target Start/End: Original strand, 7609296 - 7609637
Alignment:
| Q |
29 |
actagtacaacacttataatatatgattgaaggagtgtttcattgattttgtaaagattttcattcaaatcacggatcatgaatgactctaatgtcaaca |
128 |
Q |
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| T |
7609296 |
actagtccaacacttataatat--gattgaaggagtgtttcattgattttgtaaagattttcattca---cacggatcatgaatgactctaatgtcaaca |
7609390 |
T |
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| Q |
129 |
ctcaatannnnnnn-gaggtaattgtcaatactatcattaatatcgtgttatgaaaatgaaggtattggctgtaaagtacaaacaactcttacaaatgcc |
227 |
Q |
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| T |
7609391 |
ctcaatattttttttgaggaaattgtcaatactatcattaatatcgtgttatgaaaatgaaggtattggctgtaaagtacaaacaactcttacaaatgcc |
7609490 |
T |
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| Q |
228 |
ttgatcatgcatgcatggcttggacacaaacgtcaacgacaacttgttcagagctatacgcgtataatttaagtaagggaaatggtccaagaactttttc |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7609491 |
ctgatcatgcatgcatggcttggacacaaacgtcaacgacaacttgttcagagc--tacgcgtataatttaagtaagggaaatggtccaagaactttttc |
7609588 |
T |
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| Q |
328 |
ctttgattacacaataatgaacatcaagcttgttagctgtatgatatta |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7609589 |
ctttgattacacaataatgaacatcaagcttgttagctgtatgatatta |
7609637 |
T |
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